Pairwise Alignments

Query, 1208 a.a., exodeoxyribonuclease V subunit beta from Vibrio cholerae E7946 ATCC 55056

Subject, 671 a.a., ATP-dependent DNA helicase Rep (RefSeq) from Shewanella sp. ANA-3

 Score = 67.0 bits (162), Expect = 5e-15
 Identities = 121/517 (23%), Positives = 196/517 (37%), Gaps = 128/517 (24%)

Query: 341 AKAKSTHHWLSFDDLLTQLSAALDNDEQGLLGERIRTLYPVAMIDEFQDTDPLQYSIFSR 400
           A+    ++ L FDDL+   +  L + E+  +  R +T     ++DE+QDT+  QY +   
Sbjct: 172 AQHMKAYNALDFDDLILLPTLLLRHHEE--VRTRWQTKIQYLLVDEYQDTNTSQYEMVKL 229

Query: 401 LYLDYPQCGLLMIGDPKQAIYAFRGADIFTYIKARNQVNAH--------YTLGTNWRSSA 452
           L  +  +    ++GD  Q+IY++RGA      K +N V             L  N+RSS 
Sbjct: 230 LVGE--RARFTVVGDDDQSIYSWRGA------KPQNLVLLGKDFPKLKLIKLEQNYRSSQ 281

Query: 453 AMVAAVNQVFSSATHPFIYSDDIPFQPVAASPGADKRHWSLEGQVQPALTYWWPEDLDKP 512
            ++ A N +   A +P +Y               DK  +S        L Y  P      
Sbjct: 282 RILRAANILI--ANNPHVY---------------DKSLFS-------ELAYGEP------ 311

Query: 513 QSKTDYYAQMAEACAAQIQHILTASASGAATFHRGEAIEAGDLAVLVRTGNEARMVRDAL 572
             +  + A   +     +  I+     G   F        GD A+L R  +++R++  AL
Sbjct: 312 -MRVLFAANEEQEAERVVAEIIRHKFVGRTQF--------GDYAILYRGNHQSRLLERAL 362

Query: 573 SQQGIASVYLSNRDSVFASDVAQDIERLLLAVWQPEDERLLRAAVASNLFALTASELDAL 632
               I    LS   S FA    +DI   L  V  P+D+      V      +  S L+ L
Sbjct: 363 MTNRI-PYKLSGGTSFFARAEIKDIMGYLKLVVNPDDDNAFLRVVNLPKRGIGPSTLERL 421

Query: 633 NNDENEWE------------------QLIAEFRQYRRL------WSERG-----VLPMLR 663
            N  NE                      ++   Q+ R        +ERG     V  ++R
Sbjct: 422 GNFANEKHISMFEAIFDPDLNHHLPPNAMSALYQFGRFIVDTGEHAERGEPVEAVKQLIR 481

Query: 664 AVLTQRHIAERWLAESEGERWLTDYLHISELLQQATREIDSDQGLLRFLTQAMA--DAAQ 721
            +  + ++ E   +    E  +    +ISEL +  T  +  D+     L + M   +   
Sbjct: 482 KINYEDYLYETSTSAKAAEMRMK---NISELYRWVTEMLSGDE-----LDEPMTLPEVVN 533

Query: 722 GLGGSDEQIQRLESE-RRLVQIVTIHKSKGLEYPLVFLPFVMSYRESSEGKYYDAESATT 780
            L   D   +  E E    VQ++T+H SKGLE+P VF                       
Sbjct: 534 RLTLRDMMERNSEDEGGDQVQLMTLHASKGLEFPYVF----------------------- 570

Query: 781 WVDLTGNEEAL----AKADQERLAEDLRLLYVALTRA 813
              + G EE +       D++ + E+ RL YV +TRA
Sbjct: 571 ---MVGVEERILPHQTSIDEDNVDEERRLAYVGITRA 604