Pairwise Alignments

Query, 706 a.a., exodeoxyribonuclease V subunit alpha from Vibrio cholerae E7946 ATCC 55056

Subject, 697 a.a., DNA helicase/exodeoxyribonuclease V, alpha subunit from Pseudomonas syringae pv. syringae B728a

 Score =  417 bits (1072), Expect = e-121
 Identities = 294/732 (40%), Positives = 407/732 (55%), Gaps = 106/732 (14%)

Query: 10  KRLLAQGALRPLDVQFARFIGKQAVLAGHNAAESELLSVLSAALSAELGRGHICLPLCDA 69
           +R + +G LR LD  F  F      L+  +     L+ V +A  S +LG GH+CL L + 
Sbjct: 35  ERWVERGWLRALDKAFVAF------LSDLDPQADPLVLVAAALTSHQLGHGHVCLDLYET 88

Query: 70  QGNRCDLAALIGLYGEAS----LQHSERWLAVD---WQALLQASPLVGQQGEAV------ 116
                D A  +   G+      L  S+   A+D   W   L AS LV + G+        
Sbjct: 89  L-KEPDFALSLPPEGDQQSAPMLLPSQLLAALDGAAWCQALAASMLVAEVGDLSAEARQK 147

Query: 117 PLMFDGSRLYLHRYWHYEKQLAARLTELAAPQRLSPAELANLRERLNTLFARDYLGLWQA 176
           PL+    RLYL RYW YE+++AA L +  A QR +P E                 GL Q 
Sbjct: 148 PLVLAERRLYLRRYWTYERRIAAALRQRLA-QRETPPE-----------------GLPQR 189

Query: 177 LQQKPLSSVERIQLLNDRLDVVESDALDWPAIEAVVEKAQRAADLQALEQLIPLTHCLNW 236
           L                       DAL  PA     + + +A               ++W
Sbjct: 190 L-----------------------DALFGPA-----DSSPQAV--------------IDW 207

Query: 237 QKVAAAVALTRRFAVISGGPGTGKTTTVTKLLAALISQSMAQGKVPEIKLIAPTGKAAAR 296
           QK+A A+A  + F++I+GGPGTGKTTTV +LLA L + ++  G+   I+L APTGKAAAR
Sbjct: 208 QKLACALATRKGFSIITGGPGTGKTTTVVRLLALLQAPAVQSGQPLRIRLAAPTGKAAAR 267

Query: 297 LTESMGKAVSQLAIEPEIAAAIPSSSSTIHRLLGAIPGSAEFRHHTRNPLHLDLLVVDEA 356
           LTES+ + V  L +  ++   IPS  +T+HRLLG+ PG+  FRHH  N L LD+LVVDEA
Sbjct: 268 LTESISQQVQSLDVSDDVRQKIPSEVTTVHRLLGSRPGTRHFRHHAGNLLPLDVLVVDEA 327

Query: 357 SMVDLPLMVKLVEALPKHARLILLGDKDQLASVEAGAVLGDICTFLNQG-YGHEQGAQL- 414
           SM+DL +M  L+ ALP HAR++LLGDKDQLASVEAGAVLGD+C    +G Y  +  A L 
Sbjct: 328 SMIDLEMMANLLYALPAHARMVLLGDKDQLASVEAGAVLGDLCRDAEEGFYSPDTQAWLE 387

Query: 415 ---AELTGFATLRQTASKTVNPVADCLCMLQKSYRFDARSGIGQLAKAINSGSPARVEAV 471
               E  G   LRQ  ++  +P+A  + ML+ S RF   SGIGQLA+ +N     +  A+
Sbjct: 388 AVSGEDLGKGGLRQGDAQQ-HPLAQQVVMLRHSRRFGQGSGIGQLARLVNQQQDQQARAL 446

Query: 472 WQQ-SFSDIEHFALSGEH---YQQLL-------QTLVQAYRPYLSLL--NQPTEQFESTQ 518
               S  D+   AL GE    +++L+       +   Q YR YL++L   +P +      
Sbjct: 447 LSAGSHDDLFALALKGEQDLKFERLVLDGLGRGEQGPQGYRHYLNVLAAERPADDSALDD 506

Query: 519 QSMLTLAKSALDAFSRCRLLCALREGDFGVMGLNTRIERALNAHKLIKTQEEIWYHGRPI 578
                 A+S L AF   +LLCA+R+G +GV GLN RI  AL + KLI+++++ WY GRP+
Sbjct: 507 ACWTRWARSVLSAFDAFQLLCAVRKGPWGVEGLNQRITHALFSAKLIESEQQ-WYEGRPV 565

Query: 579 MVTRNDHGLGLYNGDIGLCMR-DRDDDQGR--LKVYFELPDGS--IKAVLPSRVPQHETA 633
           ++T ND+GLGL NGDIG+ +R    D +G+  L+V F   DGS  ++ VLPSR+ + ET 
Sbjct: 566 LMTHNDYGLGLMNGDIGITLRLPERDGEGKQVLRVAFPRNDGSEGVRFVLPSRLNEVETV 625

Query: 634 YAMTIHKSQGSEFDLTLLILPPDYSPILTRELVYTGITRAKKQLKLYCDNK-VLQRAIKV 692
           YAMT+HKSQGSEF  T LILP   +P+LT+EL+YTGITRAK    L    + + + A++ 
Sbjct: 626 YAMTVHKSQGSEFAHTALILPEALNPVLTKELIYTGITRAKHWFSLIEPRQGIFEEALRR 685

Query: 693 KTQRASGLVARL 704
           K +R SGL+  L
Sbjct: 686 KVKRLSGLMLGL 697