Pairwise Alignments

Query, 706 a.a., exodeoxyribonuclease V subunit alpha from Vibrio cholerae E7946 ATCC 55056

Subject, 631 a.a., exodeoxyribonuclease V (RefSeq) from Shewanella amazonensis SB2B

 Score =  406 bits (1044), Expect = e-117
 Identities = 272/707 (38%), Positives = 377/707 (53%), Gaps = 118/707 (16%)

Query: 14  AQGALRPLDVQFARFIGKQAVLAGHNAAESELLSVLSAALSAELGRGHICLPLCDAQGNR 73
           +QG L  LD  FA        +A  ++ +S L+ ++   +S +L R H CL         
Sbjct: 23  SQGELSALDRHFA------LQMAELHSDDSPLMLLMCVLVSRQLSRQHPCL--------- 67

Query: 74  CDLAALIGLYGEASLQHSERWLAVDWQALLQASP---LVGQQGEAVPLMFDGSRLYLHRY 130
            DL+AL+ L      + ++  +  D+ ALL A      VG   E  PL+ +G RLYL RY
Sbjct: 68  -DLSALM-LGNPMGTRQAQLRILADYPALLGAVANLDAVGSPDENKPLILEGKRLYLKRY 125

Query: 131 WHYEKQLAARLTELAAPQRLSPAELANLRERLNTLFARDYLGLWQALQQKPLSSVERIQL 190
             +E ++AARL  +A  +  + A  A L E L                            
Sbjct: 126 QGFESRVAARLNAMAGTELSTHAHTAALLEALFP-------------------------- 159

Query: 191 LNDRLDVVESDALDWPAIEAVVEKAQRAADLQALEQLIPLTHCLNWQKVAAAVALTRRFA 250
                  V  +A+DW                               QK+A A A  ++  
Sbjct: 160 -------VGKEAIDW-------------------------------QKIAVATAAGKQLT 181

Query: 251 VISGGPGTGKTTTVTKLLAAL-ISQSMAQGKVPEIKLIAPTGKAAARLTESMGKAVSQLA 309
           VI+GGPGTGKTTTVTKLL  L +S S+       I+++APTGKAAARL+ES+  +  +L 
Sbjct: 182 VITGGPGTGKTTTVTKLLLLLSLSSSL------NIRMVAPTGKAAARLSESIKASKQRLT 235

Query: 310 -------IEPEIAAAIPSSSSTIHRLLGAIPGSAEFRHHTRNPLHLDLLVVDEASMVDLP 362
                  I  +  A++P  +ST+HRLLG  PG+ +FRHH  NPL LDLL+VDEASMVDLP
Sbjct: 236 QELNSPLISQDAIASLPEDASTLHRLLGFQPGNHKFRHHRDNPLDLDLLLVDEASMVDLP 295

Query: 363 LMVKLVEALPKHARLILLGDKDQLASVEAGAVLGDICTFLNQGYGHEQGAQLAELTGFAT 422
           +M +L++ALP HARLILLGD+DQLASVEAGAVL DIC    QGY +    Q A + G   
Sbjct: 296 MMDRLLDALPGHARLILLGDQDQLASVEAGAVLADICEGARQGYRY-SAVQTARIEGLTG 354

Query: 423 LRQTASKTVNPVADCLCMLQKSYRFDARSGIGQLAKAINSGSPARVEAVWQQSFSDIEHF 482
            +         + D LC L  S+RF   +GIGQLA A+N G   +V AVWQ++++++   
Sbjct: 355 TKLAPRADAPGLGDNLCRLLHSHRFAEDAGIGQLAMAVNEGDKEKVAAVWQKNYAELSWI 414

Query: 483 -ALSGEHYQQLLQTLVQAYRPYLSLLNQPTEQFESTQQSMLTLAKSALDAFSRCRLLCAL 541
              + +    L+Q    AY  YL  + Q  E             K+ L  ++  R+LCA+
Sbjct: 415 PGDNSDGLAALVQLAKSAYSEYLQAMKQQAE------------PKTILQKYNEFRVLCAM 462

Query: 542 REGDFGVMGLNTRIERALNAHKLIKTQEEIWYHGRPIMVTRNDHGLGLYNGDIGLCMRDR 601
           + G++GV G+N  I  AL    LI+  +E +Y GRP+M+  ND+ LGL+NGDIG+ +   
Sbjct: 463 KNGEYGVDGINRAITAALARAGLIEPSQE-FYAGRPVMIQSNDYSLGLFNGDIGILLPVE 521

Query: 602 DDDQGRLKVYFELPDGSIKAVLPSRVPQHETAYAMTIHKSQGSEFDLTLLILPPDYSP-- 659
            D+Q RL  +F   DG +  VLP+R+P HET YAMT+HKSQGSEF    L LPP  +P  
Sbjct: 522 GDNQ-RLMTHFIQSDGQVLKVLPARLPGHETCYAMTVHKSQGSEFASVALSLPPQPTPSQ 580

Query: 660 --ILTRELVYTGITRAKKQLKLYCDNKVLQRAIKVKTQRASGLVARL 704
             ++ REL+YT ITRAK +        + + A + +T+RASGL  RL
Sbjct: 581 QSLIGRELIYTAITRAKSKFTCLGTEALFEAATQRRTERASGLADRL 627