Pairwise Alignments

Query, 706 a.a., exodeoxyribonuclease V subunit alpha from Vibrio cholerae E7946 ATCC 55056

Subject, 662 a.a., exodeoxyribonuclease V, alpha subunit (RefSeq) from Shewanella loihica PV-4

 Score =  387 bits (993), Expect = e-111
 Identities = 278/736 (37%), Positives = 378/736 (51%), Gaps = 122/736 (16%)

Query: 6   SEVAKRLLAQGALRPLDVQFARFIGKQAVLAGHNAAESELLSVLSAALSAELGRGHICLP 65
           S++ K    +G L PLD  FA  +  QA+    ++   +L +++ A LS +L + H CLP
Sbjct: 9   SQLLKHWQQEGLLTPLDRHFA--LQMQAL----HSDGDDLFTLICALLSRQLSQQHTCLP 62

Query: 66  LCDAQGNRCDLAALIGLYGEASLQHSERWLAVDWQALLQASPLVGQQGEAVPLMFDGSRL 125
           L     N                                 +PL  QQ +         +L
Sbjct: 63  LTQIDKN---------------------------------NPLHEQQPQC--------QL 81

Query: 126 YLHRYWHYEKQLAARLTELAAPQRLSPAELANLRERLNTLFARDYLGLW-QALQQKPLSS 184
            L       + LA +LT+    Q +SPA+       LNT    D   L+ Q   Q     
Sbjct: 82  ELT-----PQALAGQLTQY---QAISPAD-----GELNTPLILDGDRLYLQRYYQFETQV 128

Query: 185 VERIQLLNDRLDVVESDALDWPAIEAVVEKAQRAADLQALEQLIPLTHCLNWQKVAAAVA 244
            ER+  LN  + V   D +          +A++                 +WQKVA A A
Sbjct: 129 AERLTRLNQPITVAAPDKVACILNILFAGQAEKP----------------DWQKVATATA 172

Query: 245 LTRRFAVISGGPGTGKTTTVTKLLAALISQSMAQGKVPEIKLIAPTGKAAARLTESMGKA 304
            +++ AVI+GGPGTGKTTTVTKLL  L  +         IKL+APTGKAAARL+ES+  +
Sbjct: 173 FSQKLAVITGGPGTGKTTTVTKLLLLLCLEQQLT-----IKLVAPTGKAAARLSESIKAS 227

Query: 305 VSQLA---------IEPEIAAAIPSSSSTIHRLLGAIPGSAEFRHHTRNPLHLDLLVVDE 355
            ++LA         ++ E    +P  ++T+HRLLG IPGS  FRHH  NPL LDLL++DE
Sbjct: 228 KARLAQELAPYGDELDLEQLKQVPEEAATLHRLLGVIPGSHRFRHHKDNPLRLDLLILDE 287

Query: 356 ASMVDLPLMVKLVEALPKHARLILLGDKDQLASVEAGAVLGDICTFLNQ----------G 405
           ASMVDLP+M KL+EALP+H RLILLGD+DQLASVEAGAVL DIC  L Q           
Sbjct: 288 ASMVDLPMMHKLLEALPEHTRLILLGDQDQLASVEAGAVLADICAGLKQTSSQESGWRMR 347

Query: 406 YGHEQGAQLAELTGFATLRQTASKTVNPVADCLCMLQKSYRFDARSGIGQLAKAINSGSP 465
           Y  E+ A L++LT         ++    + D L ML  S+RF   +GIGQLA A+N    
Sbjct: 348 YSQEKAALLSQLTNEDLSNYIDARPA--LGDSLAMLMHSHRFKGDAGIGQLAGAVNRRDL 405

Query: 466 ARVEAVWQQSFSD---IEH--FALSGEHYQQLLQTLVQAYRPYLSLLN--------QPTE 512
             + +VWQ+ + +   +EH          + L+   V  YRPYL L+         Q  +
Sbjct: 406 TGILSVWQKGYDELSWLEHQLSPQGNAGLKALMAQSVDKYRPYLDLVGHLANKEQAQEVD 465

Query: 513 QFESTQQSMLTLAKSALDAFSRCRLLCALREGDFGVMGLNTRIERALNAHKLIKTQEEIW 572
           +    Q  +  +A   +  F+  R+LCA+R G++GV G+N  + +AL   +LI+   E +
Sbjct: 466 KEADQQLDLDEIANQIITRFNNFRILCAMRAGEYGVEGINAAVTQALKDAQLIQPSSE-F 524

Query: 573 YHGRPIMVTRNDHGLGLYNGDIGLCMRDRDDDQGRLKVYFELPDGSIKAVLPSRVPQHET 632
           Y GRPI++  ND+ LGL+NGDIG+ +        RL  YF   DGS+  VLP+R+P HET
Sbjct: 525 YAGRPIIIQSNDYNLGLFNGDIGVILPGHGPTH-RLMAYFVQADGSLLKVLPARLPSHET 583

Query: 633 AYAMTIHKSQGSEFDLTLLILPPDYS----PILTRELVYTGITRAKKQLKLYCDNKVLQR 688
            YAMT+HKSQGSEF     +LPP  S     +LT+ELVYT ITRAK          V + 
Sbjct: 584 CYAMTVHKSQGSEFQQVAFVLPPRPSVAQRQLLTKELVYTAITRAKGHFSCLGSQAVFEA 643

Query: 689 AIKVKTQRASGLVARL 704
           A    T RASGL  RL
Sbjct: 644 ACSQVTLRASGLAQRL 659