Pairwise Alignments

Query, 706 a.a., exodeoxyribonuclease V subunit alpha from Vibrio cholerae E7946 ATCC 55056

Subject, 728 a.a., helicase, RecD/TraA family (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  145 bits (366), Expect = 7e-39
 Identities = 134/458 (29%), Positives = 212/458 (46%), Gaps = 86/458 (18%)

Query: 237 QKVAAAVALTRRFAVISGGPGTGKTTTVTKLLAALISQSMAQGKVPEIKLIAPTGKAAAR 296
           Q  A   A   +  V++GGPGTGKTT +  ++  + +++ A+     I L APTG+AA R
Sbjct: 332 QLEAVRTATRSKVMVLTGGPGTGKTTIINAIIK-VFAETRAK-----ILLAAPTGRAAKR 385

Query: 297 LTESMGKAVSQLAIEPEIAAAIPSSSSTIHRLLGAIPGSAEFRHHTRNPLHLDLLVVDEA 356
           ++E+ G+                  S TIHRLL   P    F  +  NPL   LLVVDEA
Sbjct: 386 MSETSGR-----------------ESKTIHRLLEYSPKEDGFARNEDNPLACGLLVVDEA 428

Query: 357 SMVDLPLMVKLVEALPKHARLILLGDKDQLASVEAGAVLGDICTFLNQGYGHEQGAQLAE 416
           SM+D  LM  L++A+P  A L+ +GD  QL SV  G VL D+                  
Sbjct: 429 SMMDTMLMYHLLKAVPLGATLLFVGDVHQLPSVGPGNVLRDVI----------------- 471

Query: 417 LTGFATLRQTASKTVNPVADCLCMLQKSYRFDARSGIGQLAKAINSGSPARVEAVWQQSF 476
                      +  V PV +    L + +R  A S I   A  IN G    +E+  +   
Sbjct: 472 -----------ASGVVPVVE----LVEVFRQAAESEIICNAHRINHGEVPPLESS-RDRL 515

Query: 477 SDIEHFALSGEHYQQLLQTLVQAYRPYLSLLNQPTEQFESTQQSMLTLAKSALDAFSRCR 536
           SD   + +  +  ++ ++ +V+  R ++                     +  L   +  +
Sbjct: 516 SDF--YFIRQDDPEKAVEMIVELVRDHIP-------------------RRFGLHPVNDIQ 554

Query: 537 LLCALREGDFGVMGLNTRIERALNAHKLIKTQEEIWYH-GRPIMVTRNDHGLGLYNGDIG 595
           +L  + +G  G   LN R+++ALN   L   + E  Y     +M  RN++   ++NGDIG
Sbjct: 555 VLTPMHKGAVGAGNLNVRLQQALNGQTLCVQRGERQYRLDDKVMQIRNNYDKDVFNGDIG 614

Query: 596 -LCMRDRDDDQGRLKVYFELPDGSIK-AVLPSRVPQHETAYAMTIHKSQGSEFDLTLLIL 653
            +C+ D  + Q  L V F+  +       L   VP    AYA+++HKSQGSE+   ++ +
Sbjct: 615 RICLVDPKERQ--LTVRFDERNVPYAWEELDEIVP----AYAISVHKSQGSEYPAVVIPV 668

Query: 654 PPDYSPILTRELVYTGITRAKKQLKLYCDNKVLQRAIK 691
              +  +L R L+YTG+TR K+ + L  + + L  A+K
Sbjct: 669 LTQHYMLLQRNLIYTGVTRGKRLVVLVGEPRALAMAVK 706