Pairwise Alignments

Query, 706 a.a., exodeoxyribonuclease V subunit alpha from Vibrio cholerae E7946 ATCC 55056

Subject, 712 a.a., exodeoxyribonuclease V, alpha subunit (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  420 bits (1079), Expect = e-121
 Identities = 293/723 (40%), Positives = 387/723 (53%), Gaps = 134/723 (18%)

Query: 39  NAAESELLSVLSAALSAELGRGHICL---------PLCDAQGNRCDLAALIGLYGEASLQ 89
           N A+  L  +L A LS +L   H CL         P+ +   NRC +   +    +A LQ
Sbjct: 53  NDAQEPLFMLLCALLSQQLSAQHTCLVLEYIVPTNPMAEPI-NRCQIRLSLTELIDA-LQ 110

Query: 90  HSERWLAVDWQALLQASPLVGQQGEAVPLMFDGSRLYLHRYWHYEKQLAARLTEL-AAPQ 148
           H +                +G      PL+F+  RLYL RY H+E Q+A+ LT L AA  
Sbjct: 111 HFDA---------------IGAPNSNKPLIFEDGRLYLERYHHFETQVASALTRLSAAAL 155

Query: 149 RLSPAELANLRERLNTLFARDYLGLWQALQQKPLSSVERIQL-LNDRLDVVESDALDWPA 207
            L+P++                          PL+S  +  L L  +LD +      +P+
Sbjct: 156 SLTPSQ--------------------------PLASDNQSLLQLRRQLDCL------FPS 183

Query: 208 IEAVVEKAQRAADLQALEQLIPLTHCLNWQKVAAAVALTRRFAVISGGPGTGKTTTVTKL 267
               VE                    ++WQKVA A AL  + AVI+GGPGTGKTTTVTKL
Sbjct: 184 AAHTVEAN------------------IDWQKVATATALGNKLAVITGGPGTGKTTTVTKL 225

Query: 268 LAALISQSMAQGKVPEIKLIAPTGKAAARLTESMGKAVSQLAIEPEIAAA---------- 317
           L  L+ Q    G   +I+L+APTGKAAARL+ES+  + ++L  E + A+           
Sbjct: 226 L--LLQQL---GTPKQIRLVAPTGKAAARLSESIKASKARLEQELQQASKENPQENQVLL 280

Query: 318 -----IPSSSSTIHRLLGAIPGSAEFRHHTRNPLHLDLLVVDEASMVDLPLMVKLVEALP 372
                IP  +ST+HRLLG IP SA FRHH  NPL LDLL+VDEASMVDLP+M KL+ ALP
Sbjct: 281 TALSRIPEEASTLHRLLGVIPNSAHFRHHQGNPLRLDLLIVDEASMVDLPMMYKLLSALP 340

Query: 373 KHARLILLGDKDQLASVEAGAVLGDICTFLNQG----------YGHEQGAQLAELTGFAT 422
           +HA LILLGD+DQLASVEAGAVL DIC  L Q           Y   Q  QL  LTGF  
Sbjct: 341 EHAGLILLGDQDQLASVEAGAVLADICAGLKQASTQHTEWKMRYSQAQAEQLTALTGFNL 400

Query: 423 LRQTASKTVNPVADCLCMLQKSYRFDARSGIGQLAKAINSGSPARVEAVWQQSFSDIEHF 482
                S+    + D LCML  S+RF   +GIG LA A+N    A + +VWQ   +++   
Sbjct: 401 SHFIHSEP--KIGDSLCMLTHSHRFKGDAGIGLLASAVNRADLAGILSVWQSGLAELTWL 458

Query: 483 ALSGEHYQ---------------QLLQTLVQAYRPYLSLLNQPTE--QFESTQQSMLTLA 525
             S +H Q                LL    + Y  YL LL QPT      +++      A
Sbjct: 459 EHSVDHSQTQAKISEPSNNTGLKALLAQACEQYGDYLRLL-QPTHATPIHTSEPFCPPSA 517

Query: 526 KSALDAFSRCRLLCALREGDFGVMGLNTRIERALNAHKLIKTQEEIWYHGRPIMVTRNDH 585
             A+  F++ R+LCA+R GD+GV G+N  + +AL   KLI+ Q+E +Y GRPI++  ND+
Sbjct: 518 MEAIAKFNQYRILCAMRTGDYGVEGINLAVTKALAQAKLIQPQQE-FYLGRPIIIQSNDY 576

Query: 586 GLGLYNGDIGLCMRDRDDDQGRLKVYFELPDGSIKAVLPSRVPQHETAYAMTIHKSQGSE 645
            LGL+NGDIGL ++D ++   RL  +F   DG +  VLP+R+P HET YAMT+HKSQGSE
Sbjct: 577 NLGLFNGDIGLILQD-EERADRLMAHFIKADGKLLKVLPARLPSHETCYAMTVHKSQGSE 635

Query: 646 FDLTLLILPPDYS----PILTRELVYTGITRAKKQLKLYCDNKVLQRAIKVKTQRASGLV 701
           F+   L+LPP  S     +LT+EL+YT ITRAK+        +V +RA    TQRASGL 
Sbjct: 636 FNRVALVLPPAPSLVQWQLLTKELIYTAITRAKQHFSCLGTQQVFERASLQATQRASGLA 695

Query: 702 ARL 704
            RL
Sbjct: 696 DRL 698