Pairwise Alignments

Query, 266 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056

Subject, 277 a.a., nucleoside-specific channel-forming protein, Tsx (RefSeq) from Shewanella loihica PV-4

 Score =  317 bits (812), Expect = 2e-91
 Identities = 158/274 (57%), Positives = 194/274 (70%), Gaps = 18/274 (6%)

Query: 6   LALSLLAATSAPVLAADYSDGDIHKNDYKWMQFNLMGAFDELP--GKSSHDYLEMEFGGR 63
           LA + +AA S+   AAD SD  ++  DYKWMQFN M + DELP  G+S H+YLEMEFGGR
Sbjct: 9   LAATAVAAMSSSAFAADRSD--LYATDYKWMQFNAMYSVDELPSSGESGHNYLEMEFGGR 66

Query: 64  SGIFDLYGYVDVFNLATNKSSDKV---GDPKIFMKFAPRMSLDAFTGVDMSFGPVQEVYV 120
            GI DLYGYVDVFNL   K+ DK    G  K+FMKF PR SLDA TG D+SFGPVQE+Y 
Sbjct: 67  KGIVDLYGYVDVFNLGNEKAGDKAQGSGASKMFMKFNPRFSLDAITGKDLSFGPVQELYF 126

Query: 121 ASLFEWDGTDFKTNAFSVNNQKIGLGSDVMVPWFGKVGLNLYGTYDGNRKDWNGFQISTN 180
           ++LF W G     +   VN    G+G+DV VPW GK G+NLY  YD N+K+WNG+Q S N
Sbjct: 127 STLFNWGGGAIGED---VNATFWGIGADVNVPWLGKTGMNLYAHYDLNKKEWNGYQFSAN 183

Query: 181 WFKPFYFFENGSFISYQGYIDYQFGLKDEYST-----ASNGGAMFNGIYWHSDRFAVGYG 235
           WFKPFYFFEN SF+S+QGY+D+QFG  ++        + NGGA F G+YWHSD++A+GYG
Sbjct: 184 WFKPFYFFENKSFLSFQGYVDWQFGGDEDMGNEFVPMSDNGGAAFFGLYWHSDKYALGYG 243

Query: 236 LKGYKDVYGIKD---TDGFKSTGFGHYVAVTYKF 266
           LKGYKDVY +KD     G ++TG+GHY   TYKF
Sbjct: 244 LKGYKDVYLLKDGAGIVGLETTGWGHYFTATYKF 277