Pairwise Alignments

Query, 266 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056

Subject, 283 a.a., outer membrane protein OmpK, putative (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  294 bits (753), Expect = 1e-84
 Identities = 151/281 (53%), Positives = 184/281 (65%), Gaps = 26/281 (9%)

Query: 6   LALSLLAATSAPVLAADYSDGDIHKNDYKWMQFNLMGAFDELPGKSS----HDYLEMEFG 61
           LA + +AA S    AAD SD  +   D+ WMQFN M A +ELP   S    HDYLEMEFG
Sbjct: 9   LAATAVAAISGNAFAADRSD--LRAGDHSWMQFNAMYAVNELPRDGSTDNGHDYLEMEFG 66

Query: 62  GRSGIFDLYGYVDVFNLATNKSSDKV---GDPKIFMKFAPRMSLDAFTGVDMSFGPVQEV 118
           GR+G+ DLYGYVDVFN+      DK    G  K+FMKFAPR SLDA TG+D+S GP+QEV
Sbjct: 67  GRAGVVDLYGYVDVFNVTNRDYGDKAAGSGKSKLFMKFAPRFSLDAITGMDLSVGPIQEV 126

Query: 119 YVASLFEWDGTDFKTNAFSVNNQKIGLGSDVMVPWFGKVGLNLYGTYDGNRKDWNGFQIS 178
           Y ++LF WD    +     VN+   GLG+DVMVPW GK G+NLY  YD N KDWNG+Q S
Sbjct: 127 YFSTLFNWDDRIGE----GVNSTFWGLGADVMVPWLGKTGMNLYAYYDLNGKDWNGYQFS 182

Query: 179 TNWFKPFYFFENGSFISYQGYIDYQFGLKD-----------EYSTASNGGAMFNGIYWHS 227
            NWFKP   F+NGSFI++QGY+DYQFG  +             +  SNGGA + G++WHS
Sbjct: 183 MNWFKPVVNFDNGSFIAFQGYVDYQFGADEVNAYDANGQYVNTTFTSNGGAAYFGLHWHS 242

Query: 228 DRFAVGYGLKGYKDVYGIKD--TDGFKSTGFGHYVAVTYKF 266
           D +A+GYGLK Y DVY +KD  T G ++ GF HY   TYKF
Sbjct: 243 DNYALGYGLKAYNDVYLLKDEGTFGLETKGFAHYFTATYKF 283