Pairwise Alignments

Query, 194 a.a., RNA polymerase subunit sigma from Vibrio cholerae E7946 ATCC 55056

Subject, 186 a.a., RNA polymerase sigma factor, sigma-70 family from Pseudomonas stutzeri RCH2

 Score = 69.3 bits (168), Expect = 4e-17
 Identities = 53/171 (30%), Positives = 86/171 (50%), Gaps = 6/171 (3%)

Query: 16  ECMEKVKSRDTQAFALVFSYYSPKLKQFVMKHVGSEQVALELVQETMSTVWQKASLFDGQ 75
           E +++    D QAF  +   +  ++  F+ + +GS   A +L QET    +Q    +  +
Sbjct: 7   ELIQQAVRGDRQAFGALVRAHQARVFHFIRRLLGSTDEAADLTQETFIRAYQALPRWRPE 66

Query: 76  KSSLATWIYTIARNLSYDLLRRQKGRDAYVLADDIWPEDYCP-PDLVDHYAPEQDLLKEQ 134
            + L TW+  IARN + DLLR+++     VLA D   E   P P  +      +DL  E 
Sbjct: 67  -ARLQTWLLQIARNAALDLLRQRQRH--VVLAADEQAEPIDPAPSPLRRLQSARDL--EM 121

Query: 135 VMKFLDRLPEAQQQVIKAVYLEEIPQQDVADMLDIPLGTVKSRLRLAVEKL 185
           + + L RLP  Q++++    +E +   ++A  L +  GTVKSRL  A E L
Sbjct: 122 LERLLARLPHEQREILLLREVEGLSYDELAATLQLNAGTVKSRLARAREAL 172