Pairwise Alignments

Query, 194 a.a., RNA polymerase subunit sigma from Vibrio cholerae E7946 ATCC 55056

Subject, 193 a.a., RNA polymerase sigma factor RpoE from Pseudomonas stutzeri RCH2

 Score = 62.8 bits (151), Expect = 4e-15
 Identities = 48/180 (26%), Positives = 94/180 (52%), Gaps = 15/180 (8%)

Query: 16  ECMEKVKSRDTQAFALVFSYYSPKLKQFVMKHVGSEQVALELVQETMSTVWQKASLFDGQ 75
           + +E+V+  D +AF L+   Y  K+   +++ V     A ++ QE     ++  + F G 
Sbjct: 9   QLVERVQRGDKRAFDLLVMKYQHKILGLIVRFVHDSHEAQDVAQEAFIKAYRALANFRGD 68

Query: 76  KSSLATWIYTIARNLSYDLL--RRQKGRDAYVLADD--IWPEDYCPPDLVDHYAPEQDLL 131
            S+  TW+Y IA N + + L  R ++  D+ V ++D   +  D+    L D  +PE+ LL
Sbjct: 69  -SAFYTWLYRIAINTAKNHLVARGRRPPDSDVSSEDAEFYEGDHA---LKDIESPERSLL 124

Query: 132 KEQVMKFLDR----LPEAQQQVIKAVYLEEIPQQDVADMLDIPLGTVKSRL---RLAVEK 184
           ++++   + R    LPE  +  +     + +  +D+A ++  P+GTV+SR+   R A++K
Sbjct: 125 RDEIEDTVHRTIQLLPEDLRTALTLREFDGLSYEDIASVMQCPVGTVRSRIFRAREAIDK 184