Pairwise Alignments

Query, 194 a.a., RNA polymerase subunit sigma from Vibrio cholerae E7946 ATCC 55056

Subject, 188 a.a., Sigma-70 region 2 from Pseudomonas syringae pv. syringae B728a

 Score = 58.2 bits (139), Expect = 9e-14
 Identities = 40/170 (23%), Positives = 77/170 (45%), Gaps = 8/170 (4%)

Query: 25  DTQAFALVFSYYSPKLKQFVMKHVGSEQVALELVQETMSTVWQKASLFDGQKSSLATWIY 84
           + QA   ++   S +L     + V    +A ++V +    +W  A+ FD  + S   WI+
Sbjct: 21  EKQALQRLYQQESARLLGVAQRLVRDRALAEDIVHDAFLKIWSHAASFDASRGSARGWIF 80

Query: 85  TIARNLSYDLLRRQKGRDAYVLADDIWPEDYCPPDLVDHYAPEQDLLKEQV-----MKFL 139
           ++ R+L+ + LR        V  +D   ED+     ++ +    D    QV        L
Sbjct: 81  SVTRHLALNTLRNTTRE---VRVEDDGSEDHHEQATLEGWQEIGDAFDWQVNPGRITSCL 137

Query: 140 DRLPEAQQQVIKAVYLEEIPQQDVADMLDIPLGTVKSRLRLAVEKLRLSM 189
           ++L   ++  I   Y++    Q++A  +  PLGTVK+ ++ ++  LR  M
Sbjct: 138 EQLEPVRRNCIFHAYVDGYSHQEIAQKIGAPLGTVKAWIKRSLTALRECM 187