Pairwise Alignments

Query, 194 a.a., RNA polymerase subunit sigma from Vibrio cholerae E7946 ATCC 55056

Subject, 196 a.a., RNA polymerase sigma factor from Synechococcus elongatus PCC 7942

 Score = 71.2 bits (173), Expect = 1e-17
 Identities = 50/185 (27%), Positives = 96/185 (51%), Gaps = 6/185 (3%)

Query: 5   SPHTFGRQEWLECMEKVKSRDTQAFALVFSYYSPKLKQFVMKHVGSEQVALELVQET-MS 63
           SP      +  +   +++     A A ++  ++  +    M+ +G+ Q A +L Q+  + 
Sbjct: 7   SPTGTSNSDDQDLWSELQQGQVAALARLYDRHAGLVYGIAMQVLGNPQEAEDLTQDIFIR 66

Query: 64  TVWQKASLFDGQKSSLATWIYTIARNLSYDLLRRQKGRDAYV--LADDIWPEDYCPPDLV 121
            V ++ S +D ++ SL T++  + R+ + D LR ++ + + +  + + +  E    P + 
Sbjct: 67  LVDRQHSHYDSKRGSLRTYLAVLTRSRAIDRLRSRRTQASAIERVQNQVKQEATEDPPIA 126

Query: 122 DHYAPEQDLLKEQVMKFLDRLPEAQQQVIKAVYLEEIPQQDVADMLDIPLGTVKSRLRLA 181
              A E      +V K L +LPE+QQQV++  Y E + Q D+A+ L  PLGT+K+R R  
Sbjct: 127 SLGAAETSA---EVQKALAQLPESQQQVLRLAYYEGLSQSDIAERLSEPLGTIKARARRG 183

Query: 182 VEKLR 186
           + KLR
Sbjct: 184 LLKLR 188