Pairwise Alignments

Query, 194 a.a., RNA polymerase subunit sigma from Vibrio cholerae E7946 ATCC 55056

Subject, 180 a.a., RNA polymerase ECF sigma factor from Sinorhizobium meliloti 1021

 Score = 67.8 bits (164), Expect = 1e-16
 Identities = 49/150 (32%), Positives = 74/150 (49%), Gaps = 5/150 (3%)

Query: 36  YSPKLKQFVMKHVGSEQVALELVQETMSTVWQKASLFDGQKSSLATWIYTIARNLSYDLL 95
           + P L++F +   GS  VA +LVQ         A  F+   +    WI+ I RNL  D +
Sbjct: 15  FLPNLRRFAISLCGSRDVADDLVQSACERALASAERFE-PGTRFDAWIFRILRNLWIDQV 73

Query: 96  RRQKGRDAYVLADDIWPEDYCPPDLVDHYAPEQDLLKEQVMKFLDRLPEAQQQVIKAVYL 155
           RRQK      + DDI  E +           E  L  + V + +  LP+ Q++V+  V +
Sbjct: 74  RRQKTAG---VQDDI-TERHDIAGSSGERETEARLTLKTVAEAITELPDEQREVVLLVCV 129

Query: 156 EEIPQQDVADMLDIPLGTVKSRLRLAVEKL 185
           EE+  ++ AD++ IP+GTV SRL  A   L
Sbjct: 130 EELSYREAADVMGIPIGTVMSRLMRARRSL 159