Pairwise Alignments

Query, 194 a.a., RNA polymerase subunit sigma from Vibrio cholerae E7946 ATCC 55056

Subject, 206 a.a., Sigma-24 (FecI) (NCBI) from Rhodospirillum rubrum S1H

 Score =  122 bits (305), Expect = 6e-33
 Identities = 74/193 (38%), Positives = 109/193 (56%), Gaps = 12/193 (6%)

Query: 4   PSPHTFGRQEWLECMEKVKSRDTQAFALVFSYYSPKLKQFVMKHVGSEQVALELVQETMS 63
           PSP   G       +   +S D  AFA +F++Y+P+LK ++ +   ++  A E+ QE + 
Sbjct: 20  PSPAADGADHGALIVAIARSGDRAAFATLFTHYAPRLKSYLRRLGANDASAEEVAQEALL 79

Query: 64  TVWQKASLFDGQKSSLATWIYTIARNLSYDLLRRQKGRDAYVLADDIWPED----YCPPD 119
            VW+KA  FD  K+  ATWI+TIARNL  D+LR+++         +I PED       PD
Sbjct: 80  MVWRKAERFDPTKAGAATWIFTIARNLRIDMLRKER-------RPEIDPEDPLLEPSSPD 132

Query: 120 LVDHYAPEQDLLKEQVMKFLDRLPEAQQQVIKAVYLEEIPQQDVADMLDIPLGTVKSRLR 179
             D    E+D  + +V   L  LP  Q +V++  + E++   +VAD L +PLGTVKSRLR
Sbjct: 133 AAD-ILIEKDQRETRVRTALRSLPADQAEVVRLAFFEDLTHVEVADRLGLPLGTVKSRLR 191

Query: 180 LAVEKLRLSMDAE 192
           LA  K+R S+  E
Sbjct: 192 LAFSKVRGSVGDE 204