Pairwise Alignments

Query, 194 a.a., RNA polymerase subunit sigma from Vibrio cholerae E7946 ATCC 55056

Subject, 203 a.a., sigma-70 family RNA polymerase sigma factor from Rhodopseudomonas palustris CGA009

 Score = 59.3 bits (142), Expect = 4e-14
 Identities = 41/170 (24%), Positives = 88/170 (51%), Gaps = 9/170 (5%)

Query: 18  MEKVKSRDTQAFALVFSYYSPKLKQFVMKHVGSEQVALELVQETMSTVWQKASLFDGQKS 77
           +  + + D  A   +++ ++ ++ +F+++ V     A +LV +    VW+ A  F+G ++
Sbjct: 27  LASIANGDRTAMHTLYARHNVRVYRFILRMVRDAATAEDLVSQVFLDVWRTARQFEG-RA 85

Query: 78  SLATWIYTIARNLSYDLLRRQKGRDAYVLADDIW--PEDYCPPDLVDHYAPEQDLLKEQV 135
            ++TW+ +IAR  +   LR+++  D  +  DD+    +    P+     +   D+L+  +
Sbjct: 86  QVSTWLLSIARFKALTALRQRQHED--IDQDDVLEIADGSDSPETALDRSRTSDILRACI 143

Query: 136 MKFLDRLPEAQQQVIKAVYLEEIPQQDVADMLDIPLGTVKSRLRLAVEKL 185
            K    L  A +++I  VY  E   ++V  ++ IP  TVK+R+  A ++L
Sbjct: 144 AK----LSPAHREIINLVYYHEKSVEEVGRIVGIPQSTVKTRMFYARKQL 189