Pairwise Alignments

Query, 194 a.a., RNA polymerase subunit sigma from Vibrio cholerae E7946 ATCC 55056

Subject, 208 a.a., RNA polymerase sigma factor from Rhodopseudomonas palustris CGA009

 Score = 63.5 bits (153), Expect = 2e-15
 Identities = 52/178 (29%), Positives = 83/178 (46%), Gaps = 21/178 (11%)

Query: 18  MEKVKSRDTQAFALVFSYYSPKLKQFVMKHVGSEQVALELVQETMSTVWQKASLFDGQKS 77
           M  V  R  QAF ++ + + P+  +   + V     A ++ QE    VW KAS FD + +
Sbjct: 33  MLAVAERRQQAFRVLMARHMPRAIRLAQRIVRDPAEADDIGQEAFLRVWNKASSFDPKIA 92

Query: 78  SLATWIYTIARNLSYDLLRRQKGRDAYVLADDIWPEDYCPPDLVDHYAPEQDLLKEQVMK 137
             +TW+Y I  NLS+D  R +K R A +       ED       D  AP + L+  Q  +
Sbjct: 93  RFSTWLYRIVLNLSFD--RTRKPRHAPI-------EDAAEVPSADP-APVEALITAQQQR 142

Query: 138 FLD----RLPEAQQQVIKAVYLEEIPQQDVADMLDIP-------LGTVKSRLRLAVEK 184
            L+     LPE Q+  I   ++E +  ++ A  +++        LG  +  L+ AVEK
Sbjct: 143 LLEAALAELPERQRGAIALFHMEGLSGEEAARAMNLSPKAFESLLGRARLTLKKAVEK 200