Pairwise Alignments

Query, 194 a.a., RNA polymerase subunit sigma from Vibrio cholerae E7946 ATCC 55056

Subject, 189 a.a., sigma-70 family RNA polymerase sigma factor from Rhodopseudomonas palustris CGA009

 Score = 72.4 bits (176), Expect = 5e-18
 Identities = 49/166 (29%), Positives = 89/166 (53%), Gaps = 5/166 (3%)

Query: 20  KVKSRDTQAFALVFSYYSPKLKQFVMKHVGSEQVALELVQETMSTVWQKASLFDGQKSSL 79
           ++   D  A  +++  +  K+ +F ++ V +EQ+A +L+ E    VW++A  F+G +SS+
Sbjct: 15  RIAQGDRVAMQVLYGRHHVKVFRFGLRLVRNEQIAEDLISEVFLDVWRQAGKFEG-RSSV 73

Query: 80  ATWIYTIARNLSYDLLRRQKGRDAYVLADDIWPEDYCPPDLVDHYAPEQDLLKEQVMKFL 139
           +TW+  I R  +   LRR+K  +   L D+       P D  +    ++D   E + K L
Sbjct: 74  STWLLAITRFKALSALRRRKDAE---LDDEAAAAIEDPSDDPEIAVQKKD-TGEALRKCL 129

Query: 140 DRLPEAQQQVIKAVYLEEIPQQDVADMLDIPLGTVKSRLRLAVEKL 185
             L    ++++  VY  E   ++VA+++ IP  TVK+RL  A +KL
Sbjct: 130 SSLTPEHREIVDLVYYHEKSIEEVAEIVGIPENTVKTRLFYARKKL 175