Pairwise Alignments

Query, 194 a.a., RNA polymerase subunit sigma from Vibrio cholerae E7946 ATCC 55056

Subject, 219 a.a., RNA polymerase sigma factor (ECF01 subgroup, ECF20 subgroup) from Phaeobacter inhibens DSM 17395

 Score = 65.1 bits (157), Expect = 9e-16
 Identities = 44/158 (27%), Positives = 85/158 (53%), Gaps = 16/158 (10%)

Query: 25  DTQAFALVFSYYSPKLKQFVMKHVGSEQVALELVQETMSTVWQKASLFDGQKSSLATWIY 84
           D +A A++ +   P+     ++ +G+   A ++ QE M  +W++A  ++  ++ L+TW+Y
Sbjct: 47  DPEAAAVLTARLVPRALGVALRVLGNRAEAEDITQEAMVRLWRQAEHWEPGRARLSTWLY 106

Query: 85  TIARNLSYDLLRRQKGRDAYVLADDIWPEDYCPPDLVDHYAPE------QDLLKEQVMKF 138
            +  NL  D  RR +G   +V  D I P+   PPD     A +      QD L++ +M  
Sbjct: 107 RVVMNLCIDHKRRLRG--GHVDLDAI-PD---PPDPAKSAAEQMQDGARQDALQDALM-- 158

Query: 139 LDRLPEAQQQVIKAVYLEEIPQQDVADMLDIPLGTVKS 176
             +LPE Q+Q +   ++E++   ++A ++DI +  V+S
Sbjct: 159 --QLPERQRQAVVLRHIEDLANPEIAGIMDISVEAVES 194