Pairwise Alignments

Query, 194 a.a., RNA polymerase subunit sigma from Vibrio cholerae E7946 ATCC 55056

Subject, 216 a.a., 'RNA polymerase sigma factor (sigma-70 family; ECF11 subgroup)' from Phaeobacter inhibens DSM 17395

 Score =  103 bits (258), Expect = 2e-27
 Identities = 57/175 (32%), Positives = 99/175 (56%), Gaps = 12/175 (6%)

Query: 23  SRDTQAFALVFSYYSPKLKQFVMKHVGSEQVALELVQETMSTVWQKASLFDGQKSSLATW 82
           SR   AF  +F Y++P+LK  + +       A E+VQ+ M TVW+K+++FD +++ ++ W
Sbjct: 50  SRCKVAFGRLFDYFAPRLKGMICRSGMPPSQAEEVVQDVMLTVWRKSAMFDPERAQVSAW 109

Query: 83  IYTIARNLSYDLLRRQKGRDAYVLADDIWPEDYCPPDLVDHYAPEQDLLKEQVMKF---L 139
           IY IARN   D++R+++            PE+   P+     A +   L ++  K    L
Sbjct: 110 IYQIARNRQIDVIRKERRP---------IPEELKLPEDTQEDAAQILALDQETSKLRAAL 160

Query: 140 DRLPEAQQQVIKAVYLEEIPQQDVADMLDIPLGTVKSRLRLAVEKLRLSMDAESL 194
            RL  AQ+++++  YL E+   D+ +   +PLGT+KSR+RL +E+LR  +  + L
Sbjct: 161 ARLKPAQREMVEKAYLGELTHADIREQTGLPLGTIKSRIRLGLERLRHELKEQGL 215