Pairwise Alignments

Query, 194 a.a., RNA polymerase subunit sigma from Vibrio cholerae E7946 ATCC 55056

Subject, 190 a.a., ECF subfamily RNA polymerase sigma-24 factor (RefSeq) from Shewanella loihica PV-4

 Score = 62.4 bits (150), Expect = 5e-15
 Identities = 45/169 (26%), Positives = 78/169 (46%), Gaps = 13/169 (7%)

Query: 18  MEKVKSRDTQAFALVFSYYSPKLKQFVMKHVGSEQVALELVQETMSTVWQKASLFDGQKS 77
           +++ K  D  AF  ++  +  ++     +  G  ++A E  QET   +WQK  LFDG KS
Sbjct: 32  VQRAKQGDKTAFRQLYDQHHRRVYALCFRLAGQTELAEEATQETFVRLWQKLPLFDG-KS 90

Query: 78  SLATWIYTIARNLSYDLLRRQKGRDAYVLADDIWPEDYCPPDLVDHYAPEQDLLKEQVMK 137
              TW++++  N +   +++ K           W   + P +  + +A   D   + V K
Sbjct: 91  QFTTWLHSLTVNQALSCIKKHK---------SFWAR-FMPSE--ETHAAAIDFDYQGVDK 138

Query: 138 FLDRLPEAQQQVIKAVYLEEIPQQDVADMLDIPLGTVKSRLRLAVEKLR 186
            L RLPE  + V     LE     ++A  L+I  GT K++   A + L+
Sbjct: 139 LLLRLPERARIVFVLYALEGYQHDEIAKRLNIAPGTSKAQYHRAKKLLQ 187