Pairwise Alignments

Query, 194 a.a., RNA polymerase subunit sigma from Vibrio cholerae E7946 ATCC 55056

Subject, 212 a.a., RNA polymerase sigma factor (RefSeq) from Shewanella loihica PV-4

 Score =  162 bits (409), Expect = 5e-45
 Identities = 77/170 (45%), Positives = 117/170 (68%), Gaps = 5/170 (2%)

Query: 23  SRDTQAFALVFSYYSPKLKQFVMKHVGSEQVALELVQETMSTVWQKASLFDGQKSSLATW 82
           +RD QAF  +F +++PK+K+F +K +G+E  A ELVQETMS VW+KA L+DG K +  TW
Sbjct: 39  ARDKQAFTRLFQFFAPKIKRFGIKQLGNEAQAHELVQETMSNVWRKAHLYDGDKGAATTW 98

Query: 83  IYTIARNLSYDLLRRQKGRDAYVLADDIWPEDYCPPDLVD---HYAPEQDLLKEQVMKFL 139
           +YT+ RN ++D+LRR K +    L DDIWP +       +   H+A    L+++Q++ ++
Sbjct: 99  VYTVMRNAAFDMLRRVKAKAEMNLGDDIWPLEQAQVQSEEEPLHFA--DHLMEKQMLAYV 156

Query: 140 DRLPEAQQQVIKAVYLEEIPQQDVADMLDIPLGTVKSRLRLAVEKLRLSM 189
           D LPEAQ+ V+K VY +E+ Q+ +A    +P+GT+KSRLRLA+ KL+  M
Sbjct: 157 DSLPEAQRAVVKGVYYQELSQEQLAQQFGVPIGTIKSRLRLALAKLKQQM 206