Pairwise Alignments

Query, 194 a.a., RNA polymerase subunit sigma from Vibrio cholerae E7946 ATCC 55056

Subject, 192 a.a., RNA polymerase sigma factor RpoE (RefSeq) from Shewanella loihica PV-4

 Score = 68.2 bits (165), Expect = 9e-17
 Identities = 49/177 (27%), Positives = 91/177 (51%), Gaps = 9/177 (5%)

Query: 16  ECMEKVKSRDTQAFALVFSYYSPKLKQFVMKHVGSEQVALELVQETMSTVWQKASLFDGQ 75
           + +E+V+  D  AF L+   Y  K+   + ++V ++    ++ QE     ++    F G+
Sbjct: 9   QLVERVQQGDKNAFNLLVHKYQSKVINLIARYVRNQADVADVAQEAFIKAYRALPNFRGE 68

Query: 76  KSSLATWIYTIARNLSYDLLRRQKGRDAYVLADDIWPEDYCPPDLVDHYA-PEQDLLKEQ 134
            S+  TW+Y IA N + + L  Q  R      D    E Y   D +  +A PE+ +L ++
Sbjct: 69  -SAFYTWLYRIAVNTAKNHLVAQGRRAPANDVDAEEAEYYDGSDALKEFASPERLMLSDE 127

Query: 135 VMKF----LDRLPEAQQQVIKAVYLEEIPQQDVADMLDIPLGTVKSRL---RLAVEK 184
           + K     LD LPE  +  I    L+ +  +++A++++ P+GTV+SR+   R A++K
Sbjct: 128 IQKVVFDTLDTLPEELKMAISLRELDGMSYEEIANVMECPVGTVRSRIFRAREAIDK 184