Pairwise Alignments

Query, 194 a.a., RNA polymerase subunit sigma from Vibrio cholerae E7946 ATCC 55056

Subject, 187 a.a., Alternative RNA polymerase sigma factor SigK from Mycobacterium tuberculosis H37Rv

 Score = 63.2 bits (152), Expect = 3e-15
 Identities = 49/176 (27%), Positives = 82/176 (46%), Gaps = 8/176 (4%)

Query: 18  MEKVKSRDTQAFALVFSYYSPKLKQFVMKHVGSEQVALELVQETMSTVWQKASLFDGQKS 77
           + +V   D  AFA  + +   ++   VM+ +     + E  QE    VW+ AS FD  K 
Sbjct: 15  LRRVAGHDQAAFAEFYDHTKSRVYGLVMRVLRDTGYSEETTQEIYLEVWRNASEFDSAKG 74

Query: 78  SLATWIYTIARNLSYDLLRRQKG---RDAYVLADDIWPEDYCPPDLVDHYAPEQDLLKEQ 134
           S   W+ T+A   + D +R ++    R+    A ++ P      D+V   A   D  + +
Sbjct: 75  SALAWLLTMAHRRAVDRVRCEQAGNQREVRYGAANVDPAS----DVVADLAIAGD-ERRR 129

Query: 135 VMKFLDRLPEAQQQVIKAVYLEEIPQQDVADMLDIPLGTVKSRLRLAVEKLRLSMD 190
           V + L  L + Q+Q I+  Y   +   +V+  L   L T+KSR+R A+  LR  +D
Sbjct: 130 VTECLKALTDTQRQCIELAYYGGLTYVEVSRRLAANLSTIKSRMRDALRSLRNCLD 185