Pairwise Alignments

Query, 194 a.a., RNA polymerase subunit sigma from Vibrio cholerae E7946 ATCC 55056

Subject, 202 a.a., RNA polymerase, sigma-24 subunit, ECF subfamily from Marinobacter adhaerens HP15

 Score = 78.6 bits (192), Expect = 7e-20
 Identities = 53/179 (29%), Positives = 95/179 (53%), Gaps = 9/179 (5%)

Query: 16  ECMEKVKSRDTQAFALVFSYYSPKLKQFVMKHVGSEQVALELVQETMSTVWQKASLFDGQ 75
           E + +V  +D QAFAL++   +PKL   V++ +  +  A +++Q++   +WQKA  F   
Sbjct: 30  ELIHRVAQKDRQAFALLYQATAPKLLGTVLRILRDKGWADDVIQDSYLKIWQKAEQFQDG 89

Query: 76  KSSLATWIYTIARNLSYDLLRRQ-KGRDAYVLADDIWP--EDYCPPDLVDHYAPEQDLLK 132
           KSS  TW+ +IARN + D LR+   GR       D  P  +      L D  A       
Sbjct: 90  KSSPITWLVSIARNGAIDELRKHPAGRTTNSDELDEMPGWQTSAQEQLEDQRA------A 143

Query: 133 EQVMKFLDRLPEAQQQVIKAVYLEEIPQQDVADMLDIPLGTVKSRLRLAVEKLRLSMDA 191
            Q+   +D+L + +Q +++  YL    ++D+A   + P+ TVK+ L  A+++L+  +++
Sbjct: 144 TQLNHCIDQLEKDRQDMVRLAYLNGWSREDLASQFEQPVNTVKTWLHRALKQLKRCLES 202