Pairwise Alignments

Query, 194 a.a., RNA polymerase subunit sigma from Vibrio cholerae E7946 ATCC 55056

Subject, 222 a.a., RNA polymerase sigma-70 factor, ECF subfamily (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  143 bits (361), Expect = 2e-39
 Identities = 72/174 (41%), Positives = 114/174 (65%), Gaps = 13/174 (7%)

Query: 24  RDTQAFALVFSYYSPKLKQFVMKHVGSEQVALELVQETMSTVWQKASLFDGQKSSLATWI 83
           RD  AF  +FS++ PK++ F ++ +  + +A++LVQETM+TVW K+ L++  K S+ATW+
Sbjct: 55  RDKAAFGYLFSHFMPKIRAFGLQRLNQQGLAMDLVQETMTTVWTKSHLYNADKGSVATWV 114

Query: 84  YTIARNLSYDLLRRQKGRDAYVLADDIWPEDYCPPDLVDHYAPEQD-----LLKEQVMKF 138
           +TI RN  +D+LRR +        DDIWP       L D  A  QD      L  +++  
Sbjct: 115 FTIMRNQCFDMLRRVQHNREDAFGDDIWP-------LYD-VAVNQDNNPDHKLTAKLLAH 166

Query: 139 LDRLPEAQQQVIKAVYLEEIPQQDVADMLDIPLGTVKSRLRLAVEKLRLSMDAE 192
           LD LP AQ+QV++ +Y++E+ QQ++AD L +P+GT+KSRLRL +EKL+  ++ +
Sbjct: 167 LDALPLAQRQVVQGIYMQELTQQELADALKVPIGTIKSRLRLGLEKLKSFLETQ 220