Pairwise Alignments

Query, 194 a.a., RNA polymerase subunit sigma from Vibrio cholerae E7946 ATCC 55056

Subject, 192 a.a., RNA polymerase sigma-24 factor (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 68.6 bits (166), Expect = 7e-17
 Identities = 54/180 (30%), Positives = 96/180 (53%), Gaps = 15/180 (8%)

Query: 16  ECMEKVKSRDTQAFALVFSYYSPKLKQFVMKHVGSEQVALELVQETMSTVWQKASLFDGQ 75
           + +E+V+  D  AF L+   Y  K+   + ++V ++    ++ QE     ++    F G+
Sbjct: 9   QLVERVQRGDKNAFNLLVLKYQSKVISLISRYVRNQADVTDVAQEAFIKAYRALPNFRGE 68

Query: 76  KSSLATWIYTIARNLSYDLLRRQKGRDAYVLADDIWPED---YCPPDLVDHYA-PEQDLL 131
            S+  TW+Y IA N + + L  Q GR A   A+D+  ED   Y   D +  +A PE+ +L
Sbjct: 69  -SAFYTWLYRIAVNTAKNYLVSQ-GRRAP--ANDVDAEDAEYYEGSDALKEFASPERLML 124

Query: 132 KEQVMKF----LDRLPEAQQQVIKAVYLEEIPQQDVADMLDIPLGTVKSRL---RLAVEK 184
            +++ K     L+ LPE  +  I    L+ +  +D+A ++D P+GTV+SR+   R A++K
Sbjct: 125 SDEIKKVVFETLETLPEELRMAISLRELDGMSYEDIAIIMDCPVGTVRSRIFRAREAIDK 184