Pairwise Alignments

Query, 194 a.a., RNA polymerase subunit sigma from Vibrio cholerae E7946 ATCC 55056

Subject, 182 a.a., RNA polymerase ECF-type sigma factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 62.8 bits (151), Expect = 4e-15
 Identities = 44/175 (25%), Positives = 90/175 (51%), Gaps = 6/175 (3%)

Query: 18  MEKVKSRDTQAFALVFSYYSPKLKQFVMKHVGSEQVALELVQETMSTVWQKASLFDGQKS 77
           +E++   +T+ F++    YS  L   V++ VG  + A EL+Q+     ++  + + G+  
Sbjct: 10  IERILDGETEYFSVFLDRYSRPLYTLVVQIVGCPEDAEELLQDIFLKAFRNLNRYKGE-C 68

Query: 78  SLATWIYTIARNLSYDLLRRQKGRDAYVLADDIWPEDYCPPDLVDHY-AP-EQDLLKEQV 135
             +TWIY IA N +    R++K    Y+  + I   +  P ++ D+  AP E +   E++
Sbjct: 69  RFSTWIYRIAYNAAISATRKKKQEFLYIEENTI---NNVPDEMADNVLAPAETEEQLERL 125

Query: 136 MKFLDRLPEAQQQVIKAVYLEEIPQQDVADMLDIPLGTVKSRLRLAVEKLRLSMD 190
              +D+L   ++ +I   Y EE   +++ ++L + +  VK RL    +K+ + M+
Sbjct: 126 EMAIDQLSGEEKALITLFYYEEKSMEEIGEVLKLSISNVKVRLHRTRKKICVLMN 180