Pairwise Alignments

Query, 194 a.a., RNA polymerase subunit sigma from Vibrio cholerae E7946 ATCC 55056

Subject, 222 a.a., ECF subfamily RNA polymerase sigma-24 factor (RefSeq) from Shewanella sp. ANA-3

 Score =  140 bits (353), Expect = 2e-38
 Identities = 68/169 (40%), Positives = 111/169 (65%), Gaps = 3/169 (1%)

Query: 24  RDTQAFALVFSYYSPKLKQFVMKHVGSEQVALELVQETMSTVWQKASLFDGQKSSLATWI 83
           RD  AFA +FS++ PK++ F ++ +  + +A++LVQETM+ VW KA L++  K S+ATW+
Sbjct: 55  RDKAAFAELFSHFMPKIRAFGLQRLNQQGLAMDLVQETMTLVWTKAHLYNADKGSVATWV 114

Query: 84  YTIARNLSYDLLRRQKGRDAYVLADDIWPEDYCPPDLVDHYAPEQDLLKEQVMKFLDRLP 143
           +TI RN  +D+LRR +        DDIWP       +     P+   L  +++  LD LP
Sbjct: 115 FTIMRNQCFDMLRRIQHNREDAFGDDIWP--IYDVAVSQENGPDHK-LTAKLLAHLDSLP 171

Query: 144 EAQQQVIKAVYLEEIPQQDVADMLDIPLGTVKSRLRLAVEKLRLSMDAE 192
             Q+QV++ +Y++E+ QQ++AD L +P+GT+KSRLRL +EKL+  ++ +
Sbjct: 172 LPQRQVVQGIYMQELTQQELADALKVPIGTIKSRLRLGLEKLKSFLETQ 220