Pairwise Alignments

Query, 226 a.a., transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 262 a.a., anti-ECFsigma factor, ChrR (RefSeq) from Shewanella amazonensis SB2B

 Score =  114 bits (284), Expect = 2e-30
 Identities = 79/263 (30%), Positives = 124/263 (47%), Gaps = 40/263 (15%)

Query: 1   MSYHPNYALLAAYAEGGLDSAHGLAISAHLEICPHCRDLVHEIEAELG------------ 48
           + +HP+  +L  +A G       +A+SAH E+CP C   V   + +L             
Sbjct: 2   IKHHPSDEMLLTHAAGETVLGLAIALSAHCELCPTCAAKVEHFQHKLAMHHLPLPDQTSE 61

Query: 49  -------------ELLNQQAASSVALSDDANWQ-------AMFDSIVALPQQAA---SNT 85
                          ++Q   S++  + D +W+       ++FD+I A P   A   S T
Sbjct: 62  AAPSGVISKSASEGHIDQSGVSALDSAWDISWESQDNSLDSLFDAITATPAANAAQISAT 121

Query: 86  PVKTTPVMVTVNGKQIAIPKVLARLVKPEQQWRSYG--GKVFSLPLQSED-NVRMNLMYI 142
                 +   V G   ++PK     +       S+   G+V  + L + D   R +L++I
Sbjct: 122 AGNAVLLATEVKGVSYSLPKAFRPFIANPALASSWSGIGQVSRMRLDTRDGKARSSLLHI 181

Query: 143 SQGVSIPQHTHKGFESTLVLHGGFSDENGHYDVGDFMQHDGQICHSPSTPQDQDCLCLTV 202
           + G  IP+HTHKG E TL+LHG FSDE G Y  GDFM  D +  H+P T     CLC TV
Sbjct: 182 AAGGEIPEHTHKGQEITLLLHGHFSDEMGDYAPGDFMVTDTRHQHTPKTL--DGCLCYTV 239

Query: 203 LTEPMVFTQGVARIFNLFGKGLY 225
           +  P+ FT+G++++ N  G+ +Y
Sbjct: 240 VDAPLHFTKGLSKLLNPIGELIY 262