Pairwise Alignments

Query, 226 a.a., transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 249 a.a., anti-ECFsigma factor, ChrR (RefSeq) from Shewanella loihica PV-4

 Score =  123 bits (308), Expect = 4e-33
 Identities = 77/254 (30%), Positives = 128/254 (50%), Gaps = 35/254 (13%)

Query: 1   MSYHPNYALLAAYAEGGLDSAHGLAISAHLEICPHCRDLVHEI-------------EAEL 47
           +++HPN  +LA +  G L ++  + +++H+E+C  C   V  +             +  L
Sbjct: 2   INHHPNSDVLAQFVAGTLPASVSVLVASHVELCSECTRAVQALTEQAAIDAFGESSQEAL 61

Query: 48  GELLNQQAASSVALSDDANWQAMFD----------------SIVALPQQAASNTPVKTTP 91
            +       + V+  DD +    FD                +I AL +      P   T 
Sbjct: 62  RDASQPAGLADVSGLDDFDGLDDFDTSDQFGDSDEFADCINAITALERDDTQQLPQTVTE 121

Query: 92  VMVTVNGKQIAIPKVLARLVKPEQQWRSYGGKVFSLPLQSEDNVRMNLMYISQGVSIPQH 151
             + V G++I +P  L  +  P ++W+  G    S     + ++RM+L++I +G S+P H
Sbjct: 122 --IAVGGERIPLPTALRSI--PLKEWQGMGKLSRSRLALDDGDLRMSLLHIDKGGSVPCH 177

Query: 152 THKGFESTLVLHGGFSDENGHYDVGDFMQHDGQICHSPSTPQDQDCLCLTVLTEPMVFTQ 211
           THKGFE TL+L G F+DE G Y  GDF+  DGQ  H P T  ++ C+CLTV ++ + FTQ
Sbjct: 178 THKGFEITLLLQGSFTDEMGEYRKGDFIWLDGQHTHQPVT--EKGCVCLTVSSDAIRFTQ 235

Query: 212 GVARIFNLFGKGLY 225
           GV+++ N  G+ +Y
Sbjct: 236 GVSQLLNPIGRFIY 249