Pairwise Alignments

Query, 226 a.a., transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 231 a.a., anti-ECFsigma factor, ChrR (RefSeq) from Shewanella sp. ANA-3

 Score =  125 bits (313), Expect = 9e-34
 Identities = 86/237 (36%), Positives = 122/237 (51%), Gaps = 19/237 (8%)

Query: 1   MSYHPNYALLAAYAEGGLDSAHGLAISAHLEICPHCRDLVH---EIEAELGELLNQQAAS 57
           + +HP+  LL A+A+G L  +  +AI+AH  +C  C+  V    E  AEL  L   Q   
Sbjct: 2   IKHHPHTDLLLAHAQGELPLSMSIAIAAHCALCHECQSQVSRFTEQAAELAFLAPSQTTE 61

Query: 58  SVALSD-----DANWQAMFDSIVALPQQAASNTPVKTTPVMVTVNGKQIA--IPKVLAR- 109
              +S+     D  WQ M   I+ LP+   +          V +N K +   IP V  + 
Sbjct: 62  PAFISETDTAQDDAWQQMLSHIMDLPEATPTENDY-LAKATVYLNHKHVRYEIPTVFRQH 120

Query: 110 LVKPEQQWRSYGGKVFSLPLQ-SEDNVRMNLMYISQGVSIPQHTHKGFESTLVLHGGFSD 168
           +  P QQ     GKV  +    +E + R +L++I     IPQHTHKG+E TL+L G FSD
Sbjct: 121 IAHPWQQI----GKVSRMRFDVNESHTRASLLHIDALGEIPQHTHKGYELTLLLAGEFSD 176

Query: 169 ENGHYDVGDFMQHDGQICHSPSTPQDQDCLCLTVLTEPMVFTQGVARIFNLFGKGLY 225
            NG Y  GDF+  DG   HSP T     CLC TVL  P+ FT+G++++ N  G+ +Y
Sbjct: 177 LNGQYVPGDFIILDGNTHHSPKT--QSGCLCYTVLDAPLYFTKGLSKLLNPIGELIY 231