Pairwise Alignments

Query, 462 a.a., MFS transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 393 a.a., AmpG protein, beta-lactamase induction signal transducer (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 76.6 bits (187), Expect = 1e-18
 Identities = 86/409 (21%), Positives = 168/409 (41%), Gaps = 46/409 (11%)

Query: 48  KDAGLSRAAIGYFGS-VFAVYAINFLWAPLVDRVKLPILHSMLGQRRSWIFFCQSIVLVC 106
           K  GLS   I  + S ++  + I  LW+P VD VK          +RSWI   Q ++   
Sbjct: 3   KRLGLSNTEIALYTSWLYLPWTIKPLWSPFVDLVKT---------KRSWIIAMQGLIAAG 53

Query: 107 TLLIAGVNPANN-LMLTSMFALGIAIASATQDVAVDAFRIDTFPKSESTKLPQASAMA-- 163
              IA   P  + + LT  F   +A +SAT D+A D F +      E +           
Sbjct: 54  FAGIAFFIPTPHYVQLTLAFFWLMAFSSATHDIAADGFYMLGLNNKEQSFFVGIRNTCYR 113

Query: 164 ---VVGWWTGYSLPGYFAFVNAD-SIGWNGVYYIMAGV-VGLLMLFTLLVGEPHTQRDQL 218
              + G      L G+    + +  + W+  +Y+MAG+ +GL +    ++  PH   D  
Sbjct: 114 FANIFGQGILVMLAGWLETSHGNVPMAWSITFYLMAGLFLGLTLYHRFIL--PHPASD-- 169

Query: 219 QQLAEERHQQVVSNPVLS--WLTVTVLEPFIDFFRRNGFRVALTLLLFVFLFKIGEAFLG 276
                      V  P L+   L     + F+ FF +    +   +  F+  +++GE+ L 
Sbjct: 170 -----------VKRPGLTPGKLLEDFFKTFVTFFEKKNLGL---MFFFLLTYRLGESQLA 215

Query: 277 RMSIAFYKE------IGFSNEQIGYYSKLLGWGITILFTLLGSLVNIKFGIVRGLMIGGI 330
           +++  F  +      +G S   +G     +G    ++  ++   +  + G  + ++   +
Sbjct: 216 KIASPFLLDGAEQGGLGLSTASVGVIYGTIGVAALLIGGIISGFLVSRDGFKKWIIPMAL 275

Query: 331 AMASSNLMFAWIAKVGPNEHLFLA-TLFVDNFTSAFSTVAFVSFLTLMTGQAFSATQYAL 389
           A+   +L++ W+A   P+  L ++  + ++     F   A++ +L  +         YA+
Sbjct: 276 AINLPDLLYVWMAAATPDNLLLISICVAIEQLGYGFGFTAYMLYLIYIADGEHKTAHYAI 335

Query: 390 LASLGNLGRTTIASFSGELADFLNDWSLFFILTAVMVIPSLIMLYSLRH 438
                 LG       +G + + L  ++ FFI   V  IP ++  + +R+
Sbjct: 336 GTGFMALGMMLPGMPAGWIQEHLG-YTNFFIWVCVCTIPGILASWMIRN 383