Pairwise Alignments

Query, 446 a.a., NADH:ubiquinone reductase (Na(+)-transporting) subunit A from Vibrio cholerae E7946 ATCC 55056

Subject, 456 a.a., Na(+)-translocating NADH-quinone reductase subunit A (RefSeq) from Shewanella loihica PV-4

 Score =  511 bits (1316), Expect = e-149
 Identities = 264/447 (59%), Positives = 326/447 (72%), Gaps = 6/447 (1%)

Query: 3   TIKKGLDLPIAGTPSQVISDGKAIKKVALLGEEYVGMRPTMHVRVGDEVKKAQILFEDKK 62
           TIKKGLD+PIAG P Q I       KVALLGEEYVG++PT+ V VGD VKK Q LFEDKK
Sbjct: 13  TIKKGLDVPIAGEPRQEIDCCARPAKVALLGEEYVGLKPTLLVEVGDRVKKGQTLFEDKK 72

Query: 63  NPGVKFTSPVSGKVVEINRGAKRVLQSVVIEVAGDDQVTFDKFEANQLASLNRDAIKTQL 122
            PG+ FT+P SG VVEINRG +RVLQSVVI+V GD+QVTF  +  + L+ L+R+A++  L
Sbjct: 73  APGIGFTAPASGVVVEINRGERRVLQSVVIQVEGDEQVTFKAY--SDLSRLSREAVQQNL 130

Query: 123 VESGLWTAFRTRPFSKVPAIDSTSEAIFVTAMDTNPLAAEPTVVINEQSEAFVAGLDVLS 182
            ESGLWTA RTRPFS+VP +DS   AIFV AMDTNPLAA+P V+I EQ EAF AGL+VL+
Sbjct: 131 AESGLWTALRTRPFSRVPLLDSEPAAIFVNAMDTNPLAADPRVIIAEQREAFAAGLEVLT 190

Query: 183 ALTTGKVYVCKK-GTSLPRSQQPNVEEHVFDGPHPAGLAGTHMHFLYPVSADHVAWSINY 241
            LT+GK+++C   G +LP +    VE H F G HPAGL GTH+HF+ P S +   W + Y
Sbjct: 191 YLTSGKIHLCHDAGEALPGADLARVESHRFAGVHPAGLVGTHIHFIAPASLERPVWHLGY 250

Query: 242 QDVIAVGQLFLTGELYTQRVVSLAGPVVNKPRLVRTVMGASLEQLVDSEIMPGEVRIISG 301
           QDVIA G+LFLTGELYT RVV+L GP    PRL+RT +GA L  LV+ EI PG  R++SG
Sbjct: 251 QDVIAYGKLFLTGELYTDRVVALGGPTALNPRLLRTQLGAQLSTLVEGEIKPGSNRVVSG 310

Query: 302 SVLSGTKATGPHAYLGRYHLQVSVLREGRDKELFGWAMPGKNKFSVTRSFLGHLFKG--Q 359
           SVL+G  A G H YLGR+H Q+SVL E    +L  W   G +KFS+TR+     FK   +
Sbjct: 311 SVLAGHTAFGVHDYLGRFHQQISVLAEDAKHQLLPWVRGGADKFSITRAVTSR-FKATKR 369

Query: 360 VYNMTTTTNGSDRSMVPIGNYEKVMPLDMEPTLLLRDLCAGDSDSAVRLGALELDEEDLA 419
           ++++TT   GS R+M+  G  ++VMPLD+ PTLL+RDL   D+D A  LGALELDEEDLA
Sbjct: 370 LFDLTTHAGGSHRAMMAFGQLDRVMPLDILPTLLVRDLVVRDTDEAQALGALELDEEDLA 429

Query: 420 LCTFVCPGKYEYGQLLRECLDKIEKEG 446
           LCTFVCPGKY++G+ LR CLD IE+EG
Sbjct: 430 LCTFVCPGKYDFGRELRICLDIIEREG 456