Pairwise Alignments

Query, 415 a.a., NADH:ubiquinone reductase (Na(+)-transporting) subunit B from Vibrio cholerae E7946 ATCC 55056

Subject, 350 a.a., electron transport complex subunit RsxD from Rahnella sp. WP5

 Score =  112 bits (281), Expect = 1e-29
 Identities = 85/306 (27%), Positives = 134/306 (43%), Gaps = 41/306 (13%)

Query: 130 LPIYATVFIVGGFWEVLFCMVRKHEVNEGFFVTSILFALIVPPTLPLWQAALGITFGVVV 189
           L I   +   G   ++    V+K   +    +T++L  + +PP  P W   LG  F +++
Sbjct: 49  LAIVIALLAEGAVLQLRKLPVKKRLGDNSALLTAVLLGISLPPLGPWWMVVLGTIFAIII 108

Query: 190 AKEVFGGTGRNFLNPALAGRAFLFFAYPAQISGDL------------------VWTA--- 228
           AK+++GG G+N  NPA+ G   L  ++P Q++  L                  ++T    
Sbjct: 109 AKQLYGGLGQNPFNPAMVGYVVLLISFPVQMTTWLPPDVLQHHHVGFTDTLLTIFTGHNS 168

Query: 229 -----------ADGYSGATALSQWAQGGAGALINNATGQTITWMDAFIGNIPGSIGEVST 277
                       DG + AT L  +  G    L +  T   I     F G + G   +   
Sbjct: 169 QDLTAYQLNMNVDGVTQATPLDAFKTG----LRSGHTADQILGTPLFSGTLAGLGWQWIN 224

Query: 278 LALMIGAAFIVYMGIASWRIIGGVMIGMILLSTLFNVIGSDTNAMFNMPWHWHLVLGGFA 337
           L  + G  F+++  I SW I    M+GM+++     +        +  P    L  G   
Sbjct: 225 LGFLAGGLFLMWRKIISWHI-PAAMLGMLVICA--GIAWGLAPENYPSPLIG-LFSGATM 280

Query: 338 FGMFFMATDPVSASFTNSGKWAYGILIGVMCVLIRVVNPAYPEGMMLAILFANLFAPLFD 397
            G FF+ATDPV+AS T  G+  +G LIG++  LIR     YP+G+  A+L AN+  PL D
Sbjct: 281 LGAFFIATDPVTASTTPKGRLIFGGLIGLLVWLIRSYG-GYPDGVAFAVLLANITVPLID 339

Query: 398 HVVVER 403
           H    R
Sbjct: 340 HYTQPR 345