Pairwise Alignments

Query, 415 a.a., NADH:ubiquinone reductase (Na(+)-transporting) subunit B from Vibrio cholerae E7946 ATCC 55056

Subject, 399 a.a., Na(+)-translocating NADH-quinone reductase subunit B (RefSeq) from Shewanella loihica PV-4

 Score =  546 bits (1407), Expect = e-160
 Identities = 275/412 (66%), Positives = 313/412 (75%), Gaps = 15/412 (3%)

Query: 1   MGLKKFLEDIEHHFEPGGKHEKWFALYEAAATLFYTPGLVTKRSSHVRDSVDLKRIMIMV 60
           MGLK+F + IE  FE GGK+EKW+AL+EAA T+FYTPG V K  +HVRD++DLKR+MI V
Sbjct: 1   MGLKQFFKSIEPQFEKGGKYEKWYALFEAAYTVFYTPGHVNKGRTHVRDNLDLKRMMITV 60

Query: 61  WLAVFPAMFWGMYNAGGQAIAALNHLYSGDQLAAIVAGN-WHYWLTEMLGGTMSSDAGWG 119
           W   FPAMF GMYN G QA  AL        LA     + W   L  + G  +++D+G  
Sbjct: 61  WACAFPAMFVGMYNVGLQAQDAL--------LAGFATPDTWQTALFGLFGTELTADSGVA 112

Query: 120 SKMLLGATYFLPIYATVFIVGGFWEVLFCMVRKHEVNEGFFVTSILFALIVPPTLPLWQA 179
           + M  GA +FLPIYA  F VGG WEVLF  VR HEVNEGFFVTSILFAL +P T+PLW  
Sbjct: 113 ALMWYGACWFLPIYAVTFAVGGIWEVLFATVRGHEVNEGFFVTSILFALTLPATIPLWMV 172

Query: 180 ALGITFGVVVAKEVFGGTGRNFLNPALAGRAFLFFAYPAQISGDLVWTAADGYSGATALS 239
           ALGITFGVVVAKE+FGGTGRNFLNPALAGRAFLFFAYP  +SGD  W  ADG+SGATALS
Sbjct: 173 ALGITFGVVVAKEIFGGTGRNFLNPALAGRAFLFFAYPLNMSGDTTWVVADGFSGATALS 232

Query: 240 QWAQGGAGALINNATGQTITWMDAFIGNIPGSIGEVSTLALMIGAAFIVYMGIASWRIIG 299
           Q AQG      N A      W DAF+G IPGS+GEVSTLA+++G   I+Y  IASWRI+G
Sbjct: 233 QAAQGTLEYGFNQA------WWDAFLGFIPGSVGEVSTLAILLGGLVIIYTRIASWRIVG 286

Query: 300 GVMIGMILLSTLFNVIGSDTNAMFNMPWHWHLVLGGFAFGMFFMATDPVSASFTNSGKWA 359
           GVM+GMI +S L N IGSDTN MF MPW+WH+VLGGFAFGM FMATDPVSASFTN  KWA
Sbjct: 287 GVMVGMIAVSLLLNAIGSDTNPMFAMPWYWHMVLGGFAFGMMFMATDPVSASFTNQAKWA 346

Query: 360 YGILIGVMCVLIRVVNPAYPEGMMLAILFANLFAPLFDHVVVERNIKRRLAR 411
           YGILIG M V IRV+NPA+PEGMMLAILFANLFAPLFDH VV+ NIKRR+AR
Sbjct: 347 YGILIGAMAVFIRVINPAFPEGMMLAILFANLFAPLFDHFVVQANIKRRIAR 398