Pairwise Alignments

Query, 415 a.a., NADH:ubiquinone reductase (Na(+)-transporting) subunit B from Vibrio cholerae E7946 ATCC 55056

Subject, 349 a.a., membrane protein, putative (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  109 bits (273), Expect = 1e-28
 Identities = 81/273 (29%), Positives = 127/273 (46%), Gaps = 40/273 (14%)

Query: 161 VTSILFALIVPPTLPLWQAALGITFGVVVAKEVFGGTGRNFLNPALAGRAFLFFAYPAQI 220
           +T+IL  + +PP  P W   +G  F +V+ K ++GG G N  NPA+A    L  ++P Q+
Sbjct: 80  LTAILIGVAIPPLAPWWMIVMGTAFAIVIVKHLYGGLGHNLFNPAMAAYVLLLVSFPLQM 139

Query: 221 SGDLVWTAADGYSGAT-----------------ALSQWAQGGAGALINNATGQTITWMDA 263
           +    W A    +  T                  + Q+  G  G  I+ AT       D 
Sbjct: 140 T---TWIAPSTVALNTPSIVDSLQLIFNVGAHVGMEQFRLGIDG--ISMATPLDTLKTDL 194

Query: 264 FIG-----NIPGSIGEVST--------LALMIGAAFIVYMGIASWRIIGGVMIGMILLST 310
            +G     ++  SI + ST        LA + G   ++ +    W I  GV+ G+ + S+
Sbjct: 195 SLGLTTTESMAKSIFDGSTGVGWFWVNLAYLAGGIVLLKLKAIRWHISTGVLAGLFVASS 254

Query: 311 LFNVIGSDTNAMFNMPWHWHLVLGGFAFGMFFMATDPVSASFTNSGKWAYGILIGVMCVL 370
           +  ++  DT+A    P  +HL  G      FF+ATDPV+A+ +  G+  +G LIGV+  +
Sbjct: 255 VGFLLSPDTHAS---PL-FHLFSGATMLAAFFIATDPVTAATSPRGRIIFGALIGVLVYI 310

Query: 371 IRVVNPAYPEGMMLAILFANLFAPLFDHVVVER 403
           IR     YP+    A+L ANL AP  D+ V  R
Sbjct: 311 IR-TQGGYPDAFAFAVLLANLCAPFIDYYVRPR 342