Pairwise Alignments

Query, 415 a.a., NADH:ubiquinone reductase (Na(+)-transporting) subunit B from Vibrio cholerae E7946 ATCC 55056

Subject, 399 a.a., NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrB (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  548 bits (1412), Expect = e-160
 Identities = 272/411 (66%), Positives = 310/411 (75%), Gaps = 13/411 (3%)

Query: 1   MGLKKFLEDIEHHFEPGGKHEKWFALYEAAATLFYTPGLVTKRSSHVRDSVDLKRIMIMV 60
           M LK F E IE  FE GGK+EK++AL+EAA T+FYTPG V    +HVRD++DLKR+MI V
Sbjct: 1   MSLKDFFERIEPDFEKGGKYEKFYALFEAAYTIFYTPGKVNNGKTHVRDNLDLKRMMITV 60

Query: 61  WLAVFPAMFWGMYNAGGQAIAALNHLYSGDQLAAIVAGNWHYWLTEMLGGTMSSDAGWGS 120
           W   FPAMF GMYN G QA  AL   ++   +       W   L  M G  +++++GW +
Sbjct: 61  WACAFPAMFVGMYNVGLQAQIALVAGFATPDV-------WQVSLFSMFGTELTANSGWPA 113

Query: 121 KMLLGATYFLPIYATVFIVGGFWEVLFCMVRKHEVNEGFFVTSILFALIVPPTLPLWQAA 180
            M  GA +FLPIYA  F VGG WEVLF  +R HEVNEGFFVTSILFAL +PPT+PLW  A
Sbjct: 114 LMWYGACFFLPIYAVTFAVGGIWEVLFAAIRGHEVNEGFFVTSILFALTLPPTIPLWMVA 173

Query: 181 LGITFGVVVAKEVFGGTGRNFLNPALAGRAFLFFAYPAQISGDLVWTAADGYSGATALSQ 240
           +GITFGVVVAKEVFGGTGRNFLNPALAGRAFLFFAYP  +SGD  W  ADGYSGATALSQ
Sbjct: 174 MGITFGVVVAKEVFGGTGRNFLNPALAGRAFLFFAYPLNMSGDTSWVVADGYSGATALSQ 233

Query: 241 WAQGGAGALINNATGQTITWMDAFIGNIPGSIGEVSTLALMIGAAFIVYMGIASWRIIGG 300
            A G      N        W DAF G IPGS+GEVSTLA+++G   I+Y  IASWRI+GG
Sbjct: 234 AAAGSLDYAFNQ------NWWDAFFGFIPGSVGEVSTLAILLGGLVIIYTRIASWRIVGG 287

Query: 301 VMIGMILLSTLFNVIGSDTNAMFNMPWHWHLVLGGFAFGMFFMATDPVSASFTNSGKWAY 360
           VM+GMI +STL NV+GSDTN MF MPW+WHLVLGGFAFGM FMATDPVSASFTN  KWAY
Sbjct: 288 VMVGMIAISTLLNVVGSDTNPMFAMPWYWHLVLGGFAFGMMFMATDPVSASFTNQAKWAY 347

Query: 361 GILIGVMCVLIRVVNPAYPEGMMLAILFANLFAPLFDHVVVERNIKRRLAR 411
           G LIG M V IRV+NPA+PEGMMLAILFANLFAPLFDH VV+ NIKRR+AR
Sbjct: 348 GFLIGAMAVFIRVINPAFPEGMMLAILFANLFAPLFDHFVVQANIKRRIAR 398