Pairwise Alignments

Query, 415 a.a., NADH:ubiquinone reductase (Na(+)-transporting) subunit B from Vibrio cholerae E7946 ATCC 55056

Subject, 410 a.a., NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrB (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  374 bits (960), Expect = e-108
 Identities = 198/403 (49%), Positives = 262/403 (65%), Gaps = 15/403 (3%)

Query: 18  GKHEKWFALYEA----AATLFYTPGLVTKRSSHVRDSVDLKRIMIMVWLAVFPAMFWGMY 73
           G  E+++A  ++      +L    G  TK   HVRD++D+KR M +V L + PA+ +G+Y
Sbjct: 15  GSQEEYYATGKSMKGFVRSLVIGSGRSTKGQVHVRDAIDVKRTMTLVGLCLLPAILFGLY 74

Query: 74  NAGGQAIAALNHLYSGDQLAAIVAGNWHYWLTEMLGGTMSSDAGWGSKMLLGATYFLPIY 133
           N G QA  AL    S           W   L   L G ++++       L G +++LPIY
Sbjct: 75  NVGLQAQLALASGLS-------TPDTWKLALFNALSGGLTAETSVIGLFLYGLSFYLPIY 127

Query: 134 ATVFIVGGFWEVLFCMVRKHEVNEGFFVTSILFALIVPPTLPLWQAALGITFGVVVAKEV 193
            T  + G FWEV+F  VR  E++EGFFVT++LF LI+P ++PLW   +GI+FGVV+AKE+
Sbjct: 128 LTALLTGLFWEVVFAKVRHQELHEGFFVTALLFTLILPVSIPLWLVVMGISFGVVIAKEL 187

Query: 194 FGGTGRNFLNPALAGRAFLFFAYPAQISGDLVWTAADGYSGATALSQWAQGG---AGALI 250
           FGG G NFLNPALAG AF++FAYP++++      A DG+SGATAL+Q A G    A    
Sbjct: 188 FGGMGYNFLNPALAGLAFIYFAYPSEVTTVKQLVAVDGFSGATALAQAAAGQLQFADYAW 247

Query: 251 NNATGQTITWMDAFIGNIPGSIGEVSTLALMIGAAFIVYMGIASWRIIGGVMIGMILLST 310
            +A      W + F G   G+IGE STLA+++G   ++   +A WRI+ GVM+GMI  +T
Sbjct: 248 YSAFSDP-NWWNNFFGFTVGAIGETSTLAVLLGGLLLLITRLADWRIVVGVMLGMIATAT 306

Query: 311 LFNVIGSDTNAMFNMPWHWHLVLGGFAFGMFFMATDPVSASFTNSGKWAYGILIGVMCVL 370
           LFN+IGS TN M +MPW WHLV GGFA  M FMATDPV+ S+T  GK+ YG LIG M VL
Sbjct: 307 LFNLIGSSTNQMMSMPWTWHLVTGGFAIAMMFMATDPVTTSYTRPGKFVYGALIGFMTVL 366

Query: 371 IRVVNPAYPEGMMLAILFANLFAPLFDHVVVERNIKRRLARYG 413
           IRV NP  PEG+MLAILFANL+APLFD++V   NIKRRL R+G
Sbjct: 367 IRVANPKMPEGVMLAILFANLWAPLFDYLVARANIKRRLKRHG 409