Pairwise Alignments

Query, 415 a.a., NADH:ubiquinone reductase (Na(+)-transporting) subunit B from Vibrio cholerae E7946 ATCC 55056

Subject, 330 a.a., Na+-transporting NADH:ubiquinone oxidoreductase, Electron transport complex protein rnfD (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  138 bits (348), Expect = 2e-37
 Identities = 86/242 (35%), Positives = 129/242 (53%), Gaps = 13/242 (5%)

Query: 161 VTSILFALIVPPTLPLWQAALGITFGVVVAKEVFGGTGRNFLNPALAGRAFLFFAYPAQI 220
           +T +L A  +P  LP+W   LG  F + V K  FGG G N  NPALAGR FL  ++P Q+
Sbjct: 82  ITGVLLAFNLPSNLPIWIIILGALFAIGVGKMSFGGLGCNPFNPALAGRVFLLLSFPVQM 141

Query: 221 S-----GDLVWTAADGYSGATALSQWAQGGAGALINNATGQTITWMDAFIGNIPGSIGEV 275
           +     G L  +  D  +GAT L+   Q   G    +A  Q    +  FIG   G IGEV
Sbjct: 142 TTWPVVGQLT-SYMDATTGATPLALMKQAIHGDA--SALSQIPDALTLFIGQNGGCIGEV 198

Query: 276 STLALMIGAAFIVYMGIASWRIIGGVMIGMILLSTLFNVIGSDTNAMFNMPWHWHLVLGG 335
           S LAL++G  ++++  I +W I   +++ + + + + +++  +      +     L+ GG
Sbjct: 199 SALALLLGLVYMLWKKIITWHIPVSIIVTVFVFAGIMHMVDPEKYVSPIL----QLLSGG 254

Query: 336 FAFGMFFMATDPVSASFTNSGKWAYGILIGVMCVLIRVVNPAYPEGMMLAILFANLFAPL 395
              G  FMATD V++  +  G   YG+ IG++ V+IR+   AYPEGM  AIL  N F PL
Sbjct: 255 LMLGAVFMATDYVTSPMSKKGMLIYGVCIGLLTVVIRLFG-AYPEGMSFAILIMNAFTPL 313

Query: 396 FD 397
            +
Sbjct: 314 IN 315