Pairwise Alignments

Query, 415 a.a., NADH:ubiquinone reductase (Na(+)-transporting) subunit B from Vibrio cholerae E7946 ATCC 55056

Subject, 404 a.a., Na(+)-translocating NADH-quinone reductase subunit B (RefSeq) from Shewanella sp. ANA-3

 Score =  374 bits (961), Expect = e-108
 Identities = 198/408 (48%), Positives = 262/408 (64%), Gaps = 16/408 (3%)

Query: 9   DIEHHFEPGGKHEKWFALYEAAATLFYTPGLVTKRSSHVRDSVDLKRIMIMVWLAVFPAM 68
           D++  +   GK  K F       +L    G  TK   HVRD++D+KR M +V L + PA+
Sbjct: 9   DLQDDYYATGKSMKGFV-----RSLVIASGRSTKGQVHVRDAIDVKRTMTLVGLCLLPAI 63

Query: 69  FWGMYNAGGQAIAALNHLYSGDQLAAIVAGNWHYWLTEMLGGTMSSDAGWGSKMLLGATY 128
            +G+YN G QA  AL    +  +        W   L   + G +S + G     L G ++
Sbjct: 64  LFGLYNVGLQAQLALASGLTTPE-------TWKLALFNAVSGGLSVETGVIGLFLYGLSF 116

Query: 129 FLPIYATVFIVGGFWEVLFCMVRKHEVNEGFFVTSILFALIVPPTLPLWQAALGITFGVV 188
           +LPIY T  +   FWEV F  VR+ E++EGFFVT++LF LI+P ++PLW   +GI+FGVV
Sbjct: 117 YLPIYLTALLTSLFWEVAFAKVRRQELHEGFFVTALLFTLILPVSIPLWLVVMGISFGVV 176

Query: 189 VAKEVFGGTGRNFLNPALAGRAFLFFAYPAQISGDLVWTAADGYSGATALSQWAQGG--- 245
           +AKE+FGG G NFLNPALAG AF++FAYP+++S      A DG+SGATAL+Q A G    
Sbjct: 177 IAKELFGGMGYNFLNPALAGLAFIYFAYPSEVSTVKQLVAVDGFSGATALAQAAAGKLQF 236

Query: 246 AGALINNATGQTITWMDAFIGNIPGSIGEVSTLALMIGAAFIVYMGIASWRIIGGVMIGM 305
           A     +A      W + F G   G+IGE STLA+++G   ++   +A WRI+ GVM+GM
Sbjct: 237 ADYAWYSAFSDP-NWWNNFFGFTVGAIGETSTLAVLLGGLLLLITRLADWRIVVGVMLGM 295

Query: 306 ILLSTLFNVIGSDTNAMFNMPWHWHLVLGGFAFGMFFMATDPVSASFTNSGKWAYGILIG 365
           +  +TLFN+IGS TN M  MPW WHLV GGFA  M FMATDPV+ S+T  GK+AYG LIG
Sbjct: 296 VATATLFNLIGSSTNQMMAMPWTWHLVTGGFAIAMMFMATDPVTTSYTRQGKFAYGALIG 355

Query: 366 VMCVLIRVVNPAYPEGMMLAILFANLFAPLFDHVVVERNIKRRLARYG 413
            M +LIRV NP  PEG+MLAILFANL+APLFD++V   NIKRR+ R+G
Sbjct: 356 FMTILIRVANPKMPEGVMLAILFANLWAPLFDYLVARANIKRRVKRHG 403