Pairwise Alignments

Query, 415 a.a., NADH:ubiquinone reductase (Na(+)-transporting) subunit B from Vibrio cholerae E7946 ATCC 55056

Subject, 349 a.a., electron transport complex, RnfABCDGE type, D subunit (RefSeq) from Shewanella sp. ANA-3

 Score =  109 bits (272), Expect = 1e-28
 Identities = 80/271 (29%), Positives = 124/271 (45%), Gaps = 36/271 (13%)

Query: 161 VTSILFALIVPPTLPLWQAALGITFGVVVAKEVFGGTGRNFLNPALAGRAFLFFAYPAQI 220
           +T+IL  + +PP  P W   +G  F +V+ K ++GG G N  NPA+A    L  ++P Q+
Sbjct: 80  LTAILIGVAIPPLAPWWMIVMGTVFAIVIVKHLYGGLGHNLFNPAMAAYVLLLVSFPVQM 139

Query: 221 SGDLVWTAADGYSGATA---------LSQWAQGGAGAL------INNATGQTITWMDAFI 265
           +    W A    +  T           +  A GG          I+ AT       D  +
Sbjct: 140 TS---WIAPSTVALNTPSVIDSLQLIFNVGAHGGMEQFRLGIDGISMATPLDTLKTDLSL 196

Query: 266 G-----NIPGSIGEVST--------LALMIGAAFIVYMGIASWRIIGGVMIGMILLSTLF 312
           G     ++  SI +  T        LA + G   ++ +    W I  GV+ G+ + S++ 
Sbjct: 197 GLTTTESMAKSIFDGGTGVGWFWVNLAYLAGGLVLLKLKAIRWHISTGVLAGLFVASSIG 256

Query: 313 NVIGSDTNAMFNMPWHWHLVLGGFAFGMFFMATDPVSASFTNSGKWAYGILIGVMCVLIR 372
            ++  DT A    P  +HL  G      FF+ATDPV+A+ +  G+  +G LIGV+  +IR
Sbjct: 257 FLLSPDTQAS---PL-FHLFSGATMLAAFFIATDPVTAATSPRGRLIFGALIGVLVYIIR 312

Query: 373 VVNPAYPEGMMLAILFANLFAPLFDHVVVER 403
                YP+    A+L ANL AP  D+ V  R
Sbjct: 313 -TQGGYPDAFAFAVLLANLCAPFIDYYVRPR 342