Pairwise Alignments

Query, 257 a.a., NADH:ubiquinone reductase (Na(+)-transporting) subunit C from Vibrio cholerae E7946 ATCC 55056

Subject, 262 a.a., NADH:ubiquinone oxidoreductase, Na translocating, gamma subunit (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  266 bits (681), Expect = 2e-76
 Identities = 144/264 (54%), Positives = 179/264 (67%), Gaps = 9/264 (3%)

Query: 1   MASNNDSIKKTLFVVIALSLVCSIIVSAAAVGLRDKQKENAALDKQSKILQVAG-IEAKG 59
           MASN DS  +TLF+V+ L L+C+I VS AAV LR  Q EN  LDKQ  IL+ AG I+ K 
Sbjct: 1   MASNKDSFGRTLFIVVGLCLICAIFVSTAAVLLRPTQAENKLLDKQKYILEAAGLIDTKA 60

Query: 60  SK----QIVELFNKSIEPRLVDFNTGDFVEG-DAANYDQRKAAKEASESIKLTAEQDKAK 114
            K    QI+E + K IE +LV+  TGD+VEG DA  +DQRKAA++   S     E D A 
Sbjct: 61  GKVTKAQILETYGKHIEAKLVNLKTGDWVEGVDANTFDQRKAARDVKTSF--VPENDIAS 118

Query: 115 IQRRANVGVVYLVKDGD-KTSKVILPVHGNGLWSMMYAFVAVETDGNTVSGLTYYEQGET 173
           ++R +   VVYLV+D   K + VILPVHG GLWS MYAF+A++ D NT+  L YYE GET
Sbjct: 119 VKRVSEDAVVYLVRDDQGKLTSVILPVHGYGLWSTMYAFLALDADLNTIQSLVYYEHGET 178

Query: 174 PGLGGEVENPAWRAQWVGKKLFDENHKPAIKIVKGGAPQGSEHGVDGLSGATLTSNGVQN 233
           PGLGGEV+N  W+A+W GKKLFD     AI + K  A   +E+GVD LSGATLTSNGVQ+
Sbjct: 179 PGLGGEVQNAQWKAKWHGKKLFDAQGNIAISVTKNPAVASTEYGVDALSGATLTSNGVQH 238

Query: 234 TFDFWLGDMGFGPFLTKVRDGGLN 257
           +  FWLG  GF  F+ K R+GGL+
Sbjct: 239 SLTFWLGKEGFASFIEKARNGGLS 262