Pairwise Alignments

Query, 257 a.a., NADH:ubiquinone reductase (Na(+)-transporting) subunit C from Vibrio cholerae E7946 ATCC 55056

Subject, 264 a.a., NADH:ubiquinone oxidoreductase, Na translocating, gamma subunit (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  188 bits (478), Expect = 8e-53
 Identities = 100/255 (39%), Positives = 152/255 (59%), Gaps = 6/255 (2%)

Query: 1   MASNNDSIKKTLFVVIALSLVCSIIVSAAAVGLRDKQKENAALDKQSKILQVAGIEAKGS 60
           M    D++  T+   I L L+CS +++  A  L++++      + Q  +L  A +     
Sbjct: 1   MVFKKDTVVGTMIFTITLCLLCSFMITGTAGVLKERKLAKKRDELQRYVLMAADVNLGQG 60

Query: 61  KQIVELFNKSIEPRLVDFNTGDFVEGDA--ANYDQRKAAKEASESIKLTAEQDKAKIQRR 118
            +  ++F KS++P L++ +TG  V+ DA   ++D+R AA     S   T ++D AKI+ R
Sbjct: 61  NEFRDIFAKSVKPLLINLDTGK-VDSDANVLDFDERMAAINPETSS--TPKKDIAKIKTR 117

Query: 119 ANVGVVYLV-KDGDKTSKVILPVHGNGLWSMMYAFVAVETDGNTVSGLTYYEQGETPGLG 177
           AN   V+ V  D  K S V++P +G GLWSM+Y +VAVE D NT+ G+  YE GETPG+G
Sbjct: 118 ANDARVFKVFDDSGKLSSVVVPFYGKGLWSMIYGYVAVEPDFNTIKGVVVYEHGETPGIG 177

Query: 178 GEVENPAWRAQWVGKKLFDENHKPAIKIVKGGAPQGSEHGVDGLSGATLTSNGVQNTFDF 237
             V +P W + W GK+LFD+  K A+++VKGG  +G  HGVD +SGAT+T  GVQ   +F
Sbjct: 178 DFVTDPHWLSLWKGKQLFDDKGKFAMRLVKGGVKEGDIHGVDAVSGATMTGRGVQRAMEF 237

Query: 238 WLGDMGFGPFLTKVR 252
           W G  GF  F  +++
Sbjct: 238 WFGVEGFQTFFNQLK 252