Pairwise Alignments

Query, 210 a.a., NADH:ubiquinone reductase (Na(+)-transporting) subunit D from Vibrio cholerae E7946 ATCC 55056

Subject, 208 a.a., Na(+)-translocating NADH-quinone reductase subunit D (RefSeq) from Shewanella amazonensis SB2B

 Score =  249 bits (635), Expect = 3e-71
 Identities = 128/208 (61%), Positives = 154/208 (74%)

Query: 1   MSSAKELKKSVLAPVLDNNPIALQVLGVCSALAVTTKLETAFVMTLAVMFVTALSNFFVS 60
           MS+    ++ ++ PV  NNP+A+QVLGVCSALAV+  ++TA VMTLAV FV   SNFF+S
Sbjct: 1   MSAVLSNRELLMRPVFANNPVAMQVLGVCSALAVSNSMQTALVMTLAVTFVLVCSNFFIS 60

Query: 61  LIRNHIPNSVRIIVQMAIIASLVIVVDQILKAYLYDISKQLSVFVGLIITNCIVMGRAEA 120
           LIR  IPNSVRII QM IIASLVIVVD +L+    D+SKQLSVFV LIITNCIVMGRAEA
Sbjct: 61  LIRAFIPNSVRIIAQMTIIASLVIVVDMVLQDVAPDLSKQLSVFVSLIITNCIVMGRAEA 120

Query: 121 FAMKSEPIPSFIDGIGNGLGYGFVLMTVGFFRELLGSGKLFGLEVLPLISNGGWYQPNGL 180
           FAMK  P  S +D IGN  GYGF+L++V F RELLGSG LFG  +L  I  GGWY PN +
Sbjct: 121 FAMKEPPHLSVMDAIGNAAGYGFILLSVAFVRELLGSGTLFGHSILKTIEQGGWYLPNEM 180

Query: 181 MLLAPSAFFLIGFMIWAIRTFKPEQVEA 208
             L PSAFFLIG +IW +   + ++ +A
Sbjct: 181 FKLPPSAFFLIGVIIWVVNIAQRKRAKA 208