Pairwise Alignments

Query, 210 a.a., NADH:ubiquinone reductase (Na(+)-transporting) subunit D from Vibrio cholerae E7946 ATCC 55056

Subject, 232 a.a., NqrDE/RnfAE family protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  131 bits (329), Expect = 1e-35
 Identities = 76/186 (40%), Positives = 110/186 (59%), Gaps = 8/186 (4%)

Query: 18  NNPIALQVLGVCSALAVTTKLETAFVMTLAVMFVTALSNFFVSLIRNHIPNSVRIIVQMA 77
           NNP  +Q LG+C  LAVTT L  A  + +A M V   SN  +SL+R+++P  +RI V + 
Sbjct: 15  NNPGLVQRLGLCPLLAVTTTLTNALGLGIATMLVLIGSNVLISLVRDYVPKEIRIPVFVM 74

Query: 78  IIASLVIVVDQILKAYLYDISKQLSVFVGLIITNCIVMGRAEAFAMKSEPIPSFIDGIGN 137
           IIA+LV  V  ++ AY Y +   L +F+ LI+TNCI++GRAEAFA ++    S  DG+  
Sbjct: 75  IIAALVTAVQLLVNAYAYGLYMSLGIFLPLIVTNCIIIGRAEAFASRNNAFSSAFDGLMM 134

Query: 138 GLGYGFVLMTVGFFRELLGSGKLF-GLEVL-----PLISNGGWYQPNGLML--LAPSAFF 189
           GLG+  VL+ +G  RE+LG G LF G + L       ++   W      +L  L P AF 
Sbjct: 135 GLGFTLVLVLLGATREILGQGTLFDGADQLLGPWAKALTFQVWQVDTSFLLAMLPPGAFI 194

Query: 190 LIGFMI 195
           ++G +I
Sbjct: 195 VMGLLI 200