Pairwise Alignments

Query, 210 a.a., NADH:ubiquinone reductase (Na(+)-transporting) subunit D from Vibrio cholerae E7946 ATCC 55056

Subject, 192 a.a., RnfAE/NqrDE family protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 65.9 bits (159), Expect = 5e-16
 Identities = 44/153 (28%), Positives = 82/153 (53%), Gaps = 6/153 (3%)

Query: 11  VLAPVLDNNPIALQVLGVCSALAVTTKLETAFVMTLAVMFVTALSNFFVSLIRNH--IPN 68
           +++ VL NN + ++ LG+C  + V++KLE+A  M++A  FV  L++    L+  +  +P 
Sbjct: 8   LISTVLVNNFVLVKFLGLCPFMGVSSKLESAIGMSMATTFVLTLASILSYLVNQYLLLPF 67

Query: 69  SVRIIVQMAIIASLVIVV---DQILKAYLYDISKQLSVFVGLIITNCIVMGRAEA-FAMK 124
            +  +  M+ I  + +VV   + +++     + + L +++ LI TNC V+G A      K
Sbjct: 68  DLGYLRTMSFILVIAVVVQFTEMVVQKTSAALHRALGIYLPLITTNCAVLGVALLNVNEK 127

Query: 125 SEPIPSFIDGIGNGLGYGFVLMTVGFFRELLGS 157
            + I S I G G  +G+  VL+     RE L +
Sbjct: 128 HDFIQSAIYGFGAAVGFSLVLILFSAMRERLAA 160