Pairwise Alignments

Query, 210 a.a., NADH:ubiquinone reductase (Na(+)-transporting) subunit D from Vibrio cholerae E7946 ATCC 55056

Subject, 210 a.a., NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrD (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  318 bits (816), Expect = 4e-92
 Identities = 158/209 (75%), Positives = 184/209 (88%)

Query: 1   MSSAKELKKSVLAPVLDNNPIALQVLGVCSALAVTTKLETAFVMTLAVMFVTALSNFFVS 60
           MS AKELK+ +  P+++NNPIALQVLGVCSALAVT+KLETA VM LA+  VTA SN F+S
Sbjct: 1   MSDAKELKQVLTGPIVNNNPIALQVLGVCSALAVTSKLETALVMALALTAVTAFSNLFIS 60

Query: 61  LIRNHIPNSVRIIVQMAIIASLVIVVDQILKAYLYDISKQLSVFVGLIITNCIVMGRAEA 120
           +IRNHIP+SVRIIVQM IIASLVIVVDQ+L+AY Y ISKQLSVFVGLIITNCIVMGRAEA
Sbjct: 61  MIRNHIPSSVRIIVQMTIIASLVIVVDQLLQAYAYQISKQLSVFVGLIITNCIVMGRAEA 120

Query: 121 FAMKSEPIPSFIDGIGNGLGYGFVLMTVGFFRELLGSGKLFGLEVLPLISNGGWYQPNGL 180
           +AMK+ P+ SF+DGIGNGLGYG +L+ VGF REL G+G LFG+++L  IS+GGWYQPNGL
Sbjct: 121 YAMKTPPMMSFMDGIGNGLGYGAILLAVGFVRELFGNGSLFGVQILHKISDGGWYQPNGL 180

Query: 181 MLLAPSAFFLIGFMIWAIRTFKPEQVEAK 209
           +LL PSAFFLIG +IW IRT+KPEQVEAK
Sbjct: 181 LLLPPSAFFLIGMLIWIIRTYKPEQVEAK 209