Pairwise Alignments

Query, 198 a.a., NADH:ubiquinone reductase (Na(+)-transporting) subunit E from Vibrio cholerae E7946 ATCC 55056

Subject, 202 a.a., NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrE (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  313 bits (801), Expect = 2e-90
 Identities = 159/202 (78%), Positives = 176/202 (87%), Gaps = 4/202 (1%)

Query: 1   MEHYISLLVKSIFIENMALSFFLGMCTFLAVSKKVKTSFGLGIAVIVVLTISVPVNNLVY 60
           MEHYISLL++S+FIENMAL+FFLGMCTFLAVSKKV T+ GLGIAV+VVLTISVP N ++Y
Sbjct: 1   MEHYISLLIRSVFIENMALAFFLGMCTFLAVSKKVTTAMGLGIAVVVVLTISVPANQVIY 60

Query: 61  NLVLKPDALVEG----VDLSFLNFITFIGVIAALVQILEMILDRFFPPLYNALGIFLPLI 116
             +L P AL        DLSFL FITFIGVIAALVQILEM LD++FPPLYNALGIFLPLI
Sbjct: 61  QGLLAPGALAWAGAPEADLSFLKFITFIGVIAALVQILEMALDKYFPPLYNALGIFLPLI 120

Query: 117 TVNCAIFGGVSFMVQRDYSFAESVVYGFGSGVGWMLAIVALAGIREKMKYSDVPPGLRGL 176
           TVNCAIFG VSFMV+RDY   ES+V+GFGSGVGW LAIV +AGIREK+KY+DVP GLRGL
Sbjct: 121 TVNCAIFGAVSFMVERDYKLGESLVFGFGSGVGWALAIVLMAGIREKLKYADVPNGLRGL 180

Query: 177 GITFITAGLMALGFMSFSGVQL 198
           GITFITAGLMALGFMSFSGV L
Sbjct: 181 GITFITAGLMALGFMSFSGVSL 202