Pairwise Alignments

Query, 408 a.a., NADH:ubiquinone reductase (Na(+)-transporting) subunit F from Vibrio cholerae E7946 ATCC 55056

Subject, 366 a.a., ferredoxin from Pseudomonas fluorescens FW300-N2C3

 Score = 68.6 bits (166), Expect = 3e-16
 Identities = 48/204 (23%), Positives = 99/204 (48%), Gaps = 15/204 (7%)

Query: 206 EPIIRAYSMANYPEEFGIIMLNVRIATPPPNNPNVPPGQMSSYIW-SLKAGDKCTISGPF 264
           +PI+R+Y++++ P       + ++          VP G++S+++  +L  G +  + GP 
Sbjct: 63  QPIMRSYTISSSPSVPYSFSVTIK---------RVPGGKVSNWLHDTLHEGQELAVHGPV 113

Query: 265 GEFFAKDTDA-EMVFIGGGAGMAPMRSHIFDQLKRLKSKRKMSYWYGARSKREMFYVEDF 323
           G F A D  + +++++ GG G+ P  S +        +   M++ + ARS +++ Y  + 
Sbjct: 114 GLFNAIDFPSPKVLYLSGGVGITPCMS-MARWFYDTNANVDMTFIHSARSPKDIIYHREL 172

Query: 324 DGLAAENDNFVWHCALSDPQPEDNWTGYTGFIHNVLYENYLKDHEAPEDCEYYMCGPPMM 383
           + +A+  DNF  H         + W GY G++++ + E  + D     + E + CGP   
Sbjct: 173 EHMASRIDNFSLHLICEKHGLGEPWAGYRGYLNHKMLELMVPDF---LEREVFCCGPTPY 229

Query: 384 NAAVINMLKNLGVEEENILLDDFG 407
             AV  +L+  G + +    + FG
Sbjct: 230 MTAVKRLLEAAGYDMKRYHEESFG 253



 Score = 40.8 bits (94), Expect = 7e-08
 Identities = 29/81 (35%), Positives = 42/81 (51%), Gaps = 9/81 (11%)

Query: 45  KAIVTQPGGKLLTALAGAGVFVSSACGGGGSCGQCRVKIKSGGGDILPTELDH---ISKG 101
           K+I   PG  +  A A  G+ +  ACG G  CG C+V +K GG      E+DH   I++ 
Sbjct: 291 KSIRVGPGETVHAAAAKLGMMIPKACGMG-ICGTCKV-LKLGG----EVEMDHNGGITED 344

Query: 102 EAREGERLACQVAVKADMDLE 122
           +  EG  L+C    K D+ +E
Sbjct: 345 DEAEGYILSCCSVPKGDVRIE 365