Pairwise Alignments

Query, 408 a.a., NADH:ubiquinone reductase (Na(+)-transporting) subunit F from Vibrio cholerae E7946 ATCC 55056

Subject, 361 a.a., oxidoreductase FAD-binding subunit (RefSeq) from Shewanella loihica PV-4

 Score = 50.8 bits (120), Expect = 6e-11
 Identities = 47/207 (22%), Positives = 94/207 (45%), Gaps = 15/207 (7%)

Query: 206 EPIIRAYSMANYPEEFGIIMLNVRIATPPPNNPNVPPGQMSSYIW-SLKAGDKCTISGPF 264
           E + R+Y++++ P     +++ V+          +P G++S+Y+  +LK G    +SGP 
Sbjct: 60  ERVARSYTISSSPSRPYSLVVTVK---------RIPGGRVSNYLVDNLKVGHSVNVSGPA 110

Query: 265 GEFFAKDTDAEM-VFIGGGAGMAPMRSHIFDQLKRLKSKRKMSYWYGARSKREMFYVEDF 323
           G F   D  A   +F+  G+G+ PM S +   L   +    +++ + A++K ++ + E  
Sbjct: 111 GAFNLIDIPANRYLFLSAGSGITPMYS-MSRWLTDTQLGSDIAFVHSAKAKEDLIFHEAL 169

Query: 324 DGLAAENDNFVWHCALSDPQPED---NWTGYTGFIHNVLYENYLKDHEAPEDCEYYMCGP 380
             +A  + N     +L   +  +   +  G++ F      E  +K      D   ++CGP
Sbjct: 170 LKMAQRHPNMALLYSLESGESLEARASCEGFSCFDGRFNLEMLVKAVPDYLDRTVFVCGP 229

Query: 381 PMMNAAVINMLKNLGVEEENILLDDFG 407
                AV  ML++ G +      + FG
Sbjct: 230 EPYMQAVKAMLQDAGFDMSRYHQESFG 256



 Score = 32.3 bits (72), Expect = 2e-05
 Identities = 23/95 (24%), Positives = 46/95 (48%), Gaps = 13/95 (13%)

Query: 29  LVPTGDITISINGDPEKAIVTQPGGKLLTALAGAGVFVSSACGGGGSCGQCRVKIKSGGG 88
           ++  GD++  + G+            +L  +   G+ + +AC  G  CG C+ ++ SG  
Sbjct: 279 MLQIGDLSTPLTGEQT----------VLEGIEAKGLPIIAACRSG-VCGACKCQVLSGET 327

Query: 89  DILPTELDHISKGEAREGERLACQVAVKADMDLEL 123
           +   +E+  ++  E  +G  LAC   +K+D+ L L
Sbjct: 328 ES-SSEMT-LTPAEVAQGFILACSTRLKSDVTLSL 360